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Zinc in PDB 7nlm: Lasb, N-Aryl-2-Butylmercaptoacetamide

Protein crystallography data

The structure of Lasb, N-Aryl-2-Butylmercaptoacetamide, PDB code: 7nlm was solved by J.Koehnke, A.Sikandar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.97 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.703, 89.931, 41.245, 90, 114.34, 90
R / Rfree (%) 17.8 / 20.3

Other elements in 7nlm:

The structure of Lasb, N-Aryl-2-Butylmercaptoacetamide also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Lasb, N-Aryl-2-Butylmercaptoacetamide (pdb code 7nlm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Lasb, N-Aryl-2-Butylmercaptoacetamide, PDB code: 7nlm:

Zinc binding site 1 out of 1 in 7nlm

Go back to Zinc Binding Sites List in 7nlm
Zinc binding site 1 out of 1 in the Lasb, N-Aryl-2-Butylmercaptoacetamide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Lasb, N-Aryl-2-Butylmercaptoacetamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:11.2
occ:1.00
OE2 A:GLU164 1.9 12.9 1.0
NE2 A:HIS140 2.2 13.6 1.0
NE2 A:HIS144 2.2 13.5 1.0
S11 A:UHE300 2.5 22.7 1.0
CD A:GLU164 2.8 14.4 1.0
OE1 A:GLU164 3.1 14.4 1.0
CD2 A:HIS140 3.1 14.7 1.0
CD2 A:HIS144 3.1 13.0 1.0
CE1 A:HIS144 3.2 12.1 1.0
CE1 A:HIS140 3.2 11.8 1.0
C10 A:UHE300 3.4 31.4 1.0
OH A:TYR155 3.8 17.2 1.0
OE1 A:GLU141 4.1 19.4 1.0
CG A:GLU164 4.2 12.5 1.0
CG A:HIS140 4.3 11.1 1.0
ND1 A:HIS140 4.3 11.6 1.0
ND1 A:HIS144 4.3 13.9 1.0
CG A:HIS144 4.3 13.0 1.0
C08 A:UHE300 4.4 28.5 1.0
NE2 A:HIS223 4.4 18.8 1.0
O A:HOH515 4.4 34.6 1.0
O A:HOH610 4.5 30.1 1.0
C12 A:UHE300 4.6 31.9 1.0
CB A:SER167 4.6 10.0 1.0
CZ A:TYR155 4.7 16.5 1.0
O09 A:UHE300 4.8 28.6 1.0
CD2 A:HIS223 4.8 18.5 1.0
CA A:GLU164 4.8 10.5 1.0
CE1 A:TYR155 4.8 15.8 1.0
OG A:SER167 4.9 10.5 1.0
CB A:GLU164 5.0 9.8 1.0

Reference:

J.Koehnke, A.Sikandar. Lasb, N-Aryl-2-Butylmercaptoacetamide Inhibitor Complex To Be Published.
Page generated: Fri Aug 22 02:34:05 2025

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