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Zinc in PDB 7h54: Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292)

Enzymatic activity of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292)

All present enzymatic activity of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292):
3.4.22.29;

Protein crystallography data

The structure of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292), PDB code: 7h54 was solved by R.M.Lithgo, M.Fairhead, L.Koekemoer, B.H.Balcomb, E.Capkin, A.V.Chandran, M.Golding, A.S.Godoy, J.C.Aschenbrenner, P.G.Marples, X.Ni, W.Thompson, C.W.E.Tomlinson, C.Wild, M.Winokan, M.-A.E.Xavier, D.Fearon, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.93 / 1.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.07, 56.598, 64.481, 90, 94.68, 90
R / Rfree (%) 17.5 / 19.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292) (pdb code 7h54). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292), PDB code: 7h54:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7h54

Go back to Zinc Binding Sites List in 7h54
Zinc binding site 1 out of 2 in the Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:11.4
occ:1.00
 ND1 A:HIS118 2.1 12.1 1.0
SG A:CYS116 2.3 10.7 1.0
SG A:CYS56 2.3 11.4 1.0
SG A:CYS58 2.3 12.5 1.0
CE1 A:HIS118 3.0 13.2 1.0
CG A:HIS118 3.1 12.6 1.0
CB A:CYS56 3.2 10.6 1.0
CB A:CYS58 3.2 11.9 1.0
CB A:CYS116 3.3 10.2 1.0
CB A:HIS118 3.5 13.3 1.0
N A:HIS118 4.0 12.5 1.0
NE2 A:HIS118 4.1 16.2 1.0
O A:HOH384 4.2 21.8 1.0
N A:CYS58 4.2 12.1 1.0
CA A:CYS58 4.2 11.7 1.0
CD2 A:HIS118 4.2 14.7 1.0
CA A:HIS118 4.4 12.6 1.0
CB A:ALA54 4.5 10.2 1.0
N A:GLN117 4.5 12.3 1.0
O A:HOH459 4.6 22.7 1.0
CA A:CYS116 4.6 11.0 1.0
CA A:CYS56 4.6 11.0 1.0
CG A:GLN117 4.6 17.5 1.0
C A:CYS116 4.7 11.1 1.0
C A:GLN117 5.0 12.9 1.0

Zinc binding site 2 out of 2 in 7h54

Go back to Zinc Binding Sites List in 7h54
Zinc binding site 2 out of 2 in the Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Z57473948 (A71EV2A-X1292) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:15.6
occ:1.00
 ND1 B:HIS118 2.1 16.7 1.0
SG B:CYS116 2.3 14.2 1.0
SG B:CYS58 2.3 16.7 1.0
SG B:CYS56 2.3 15.6 0.5
CE1 B:HIS118 3.0 20.4 1.0
CB B:CYS58 3.1 16.2 1.0
CG B:HIS118 3.2 18.1 1.0
CB B:CYS56 3.2 15.4 0.5
CB B:CYS116 3.3 12.7 1.0
CB B:HIS118 3.6 17.1 1.0
N B:HIS118 4.0 17.9 1.0
NE2 B:HIS118 4.2 24.5 1.0
N B:CYS58 4.2 18.1 1.0
CA B:CYS58 4.2 15.2 1.0
CD2 B:HIS118 4.3 23.3 1.0
CG B:GLN117 4.3 24.3 1.0
CA B:HIS118 4.4 17.3 1.0
CB B:ALA54 4.5 11.3 1.0
N B:GLN117 4.5 17.4 1.0
CA B:CYS116 4.6 14.5 1.0
O B:HOH457 4.6 28.5 1.0
CA B:CYS56 4.7 15.9 0.5
C B:CYS116 4.7 16.0 1.0
C B:GLN117 5.0 20.8 1.0
NH1 B:ARG138 5.0 13.8 1.0

Reference:

R.M.Lithgo, M.Fairhead, L.Koekemoer, B.H.Balcomb, E.Capkin, A.V.Chandran, M.Golding, A.S.Godoy, J.C.Aschenbrenner, P.G.Marples, X.Ni, W.Thompson, C.W.E.Tomlinson, C.Wild, M.Winokan, M.-A.E.Xavier, D.Fearon, F.Von Delft. Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease To Be Published.
Page generated: Fri Aug 22 00:43:00 2025

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