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Zinc in PDB 7dxf: Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State

Other elements in 7dxf:

The structure of Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State also contains other interesting chemical elements:

Calcium (Ca) 12 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State (pdb code 7dxf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State, PDB code: 7dxf:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7dxf

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Zinc binding site 1 out of 4 in the Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:160.7
occ:1.00
 ND1 A:HIS249 2.1 125.1 1.0
SG A:CYS255 2.3 138.8 1.0
SG A:CYS258 2.3 147.2 1.0
SG A:CYS253 2.3 128.3 1.0
CE1 A:HIS249 2.9 123.8 1.0
CB A:CYS258 3.1 127.4 1.0
CG A:HIS249 3.2 121.7 1.0
CB A:CYS255 3.4 125.8 1.0
CB A:CYS253 3.6 121.7 1.0
CB A:HIS249 3.7 115.6 1.0
NE2 A:HIS249 4.1 123.1 1.0
N A:CYS258 4.1 124.0 1.0
N A:CYS255 4.2 122.3 1.0
CA A:CYS258 4.2 124.2 1.0
CD2 A:HIS249 4.3 118.1 1.0
CA A:CYS255 4.3 126.8 1.0
C A:CYS255 4.8 128.9 1.0
CA A:CYS253 4.9 120.0 1.0
O A:CYS255 4.9 128.1 1.0

Zinc binding site 2 out of 4 in 7dxf

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Zinc binding site 2 out of 4 in the Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1001

b:160.7
occ:1.00
 ND1 B:HIS249 2.1 125.1 1.0
SG B:CYS255 2.3 138.8 1.0
SG B:CYS258 2.3 147.2 1.0
SG B:CYS253 2.3 128.3 1.0
CE1 B:HIS249 2.9 123.8 1.0
CB B:CYS258 3.1 127.4 1.0
CG B:HIS249 3.2 121.7 1.0
CB B:CYS255 3.4 125.8 1.0
CB B:CYS253 3.6 121.7 1.0
CB B:HIS249 3.7 115.6 1.0
NE2 B:HIS249 4.1 123.1 1.0
N B:CYS258 4.1 124.0 1.0
N B:CYS255 4.2 122.3 1.0
CA B:CYS258 4.2 124.2 1.0
CD2 B:HIS249 4.3 118.1 1.0
CA B:CYS255 4.3 126.8 1.0
C B:CYS255 4.8 128.9 1.0
CA B:CYS253 4.9 120.0 1.0
O B:CYS255 4.9 128.1 1.0

Zinc binding site 3 out of 4 in 7dxf

Go back to Zinc Binding Sites List in 7dxf
Zinc binding site 3 out of 4 in the Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1001

b:160.7
occ:1.00
 ND1 C:HIS249 2.1 125.1 1.0
SG C:CYS255 2.3 138.8 1.0
SG C:CYS258 2.3 147.2 1.0
SG C:CYS253 2.3 128.3 1.0
CE1 C:HIS249 2.9 123.8 1.0
CB C:CYS258 3.1 127.4 1.0
CG C:HIS249 3.2 121.7 1.0
CB C:CYS255 3.4 125.8 1.0
CB C:CYS253 3.6 121.7 1.0
CB C:HIS249 3.7 115.6 1.0
NE2 C:HIS249 4.1 123.1 1.0
N C:CYS258 4.1 124.0 1.0
N C:CYS255 4.2 122.3 1.0
CA C:CYS258 4.2 124.2 1.0
CD2 C:HIS249 4.3 118.1 1.0
CA C:CYS255 4.3 126.8 1.0
C C:CYS255 4.8 128.9 1.0
CA C:CYS253 4.9 120.0 1.0
O C:CYS255 4.9 128.1 1.0

Zinc binding site 4 out of 4 in 7dxf

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Zinc binding site 4 out of 4 in the Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Btdm-Bound Human TRPC6 Nanodisc at 2.9 Angstrom in High Calcium State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1003

b:160.7
occ:1.00
 ND1 D:HIS249 2.1 125.1 1.0
SG D:CYS255 2.3 138.8 1.0
SG D:CYS258 2.3 147.2 1.0
SG D:CYS253 2.3 128.3 1.0
CE1 D:HIS249 2.9 123.8 1.0
CB D:CYS258 3.1 127.4 1.0
CG D:HIS249 3.2 121.7 1.0
CB D:CYS255 3.4 125.8 1.0
CB D:CYS253 3.6 121.7 1.0
CB D:HIS249 3.7 115.6 1.0
NE2 D:HIS249 4.1 123.1 1.0
N D:CYS258 4.1 124.0 1.0
N D:CYS255 4.2 122.3 1.0
CA D:CYS258 4.2 124.2 1.0
CD2 D:HIS249 4.3 118.1 1.0
CA D:CYS255 4.3 126.8 1.0
C D:CYS255 4.8 128.9 1.0
CA D:CYS253 4.9 120.0 1.0
O D:CYS255 4.9 128.1 1.0

Reference:

W.Guo, Q.Tang, M.Wei, Y.Kang, J.X.Wu, L.Chen. Structural Mechanism of Human TRPC3 and TRPC6 Channel Regulation By Their Intracellular Calcium-Binding Sites. Neuron V. 110 1023 2022.
ISSN: ISSN 0896-6273
PubMed: 35051376
DOI: 10.1016/J.NEURON.2021.12.023
Page generated: Tue Oct 29 19:28:40 2024

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