Zinc in PDB 7dug: Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound

The structure of Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound, PDB code: 7dug was solved by H.Demirci, E.Destan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.78 / 3.75
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	400, 400, 173, 90, 90, 90
R / Rfree (%)	18.6 / 22.5

The structure of Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Magnesium	(Mg)	249 atoms

The binding sites of Zinc atom in the Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound (pdb code 7dug). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound, PDB code: 7dug:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn301 b:160.3 occ:1.00 SG D:CYS31 2.3 129.3 1.0 SG D:CYS26 2.3 120.0 1.0 SG D:CYS12 2.3 127.2 1.0 SG D:CYS9 2.3 101.2 1.0 O D:LEU19 3.2 172.1 1.0 O D:CYS31 3.2 154.4 1.0 CB D:CYS26 3.6 155.3 1.0 CB D:CYS31 3.6 149.7 1.0 CB D:CYS12 3.6 144.4 1.0 CB D:CYS9 3.7 129.9 1.0 CA D:CYS31 3.9 167.3 1.0 CA D:CYS9 3.9 152.6 1.0 C D:CYS31 4.0 178.2 1.0 CA D:CYS26 4.0 171.2 1.0 C D:LEU19 4.3 170.7 1.0 CB D:LYS22 4.5 181.0 1.0 N D:CYS26 4.7 176.5 1.0 N D:CYS9 4.8 156.4 1.0 O D:CYS9 4.8 177.0 1.0 O D:ARG25 4.8 179.4 1.0 CG D:LYS22 4.8 170.1 1.0 C D:CYS9 4.9 165.4 1.0 CG D:MET33 5.0 190.9 1.0 N D:LEU19 5.0 177.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Mrna and Cognate Transfer Rna Anticodon Stem-Loop and Sisomicin Derivative N1''Tfms Bound within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:176.2 occ:1.00 SG N:CYS43 2.3 129.4 1.0 SG N:CYS40 2.3 166.4 1.0 SG N:CYS27 2.3 144.7 1.0 SG N:CYS24 2.4 186.9 1.0 CB N:CYS40 3.1 170.7 1.0 CB N:CYS27 3.2 148.0 1.0 CB N:CYS43 3.2 139.2 1.0 N N:CYS40 3.7 159.0 1.0 CB N:CYS24 3.7 187.1 1.0 N N:CYS27 3.7 172.5 1.0 CA N:CYS40 4.0 165.8 1.0 CA N:CYS27 4.0 167.8 1.0 N N:CYS43 4.0 137.6 1.0 CB N:ARG29 4.0 172.9 1.0 CA N:CYS43 4.2 143.6 1.0 C N:CYS27 4.6 178.0 1.0 N N:ARG29 4.6 192.6 1.0 C N:CYS40 4.7 169.6 1.0 N2 A:G1202 4.7 194.8 1.0 N N:GLY28 4.8 185.8 1.0 CB N:ARG26 4.8 140.3 1.0 C N:LEU39 4.9 160.7 1.0 C N:ARG26 4.9 169.5 1.0 O N:CYS40 5.0 175.0 1.0 CA N:ARG29 5.0 185.9 1.0 CG N:ARG29 5.0 168.1 1.0

H.Demirci, H.Demirci, E.Destan. N/A N/A.