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Zinc in PDB 7doi: Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir.

Enzymatic activity of Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir.

All present enzymatic activity of Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir.:
2.7.7.48;

Other elements in 7doi:

The structure of Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir. also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir. (pdb code 7doi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir., PDB code: 7doi:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7doi

Go back to Zinc Binding Sites List in 7doi
Zinc binding site 1 out of 2 in the Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:44.3
occ:1.00
ND1 A:HIS295 2.2 27.2 1.0
SG A:CYS310 2.4 24.1 1.0
SG A:CYS306 2.4 28.1 1.0
SG A:CYS301 2.5 31.3 1.0
CE1 A:HIS295 2.9 27.2 1.0
O A:CYS306 3.2 28.1 1.0
CG A:HIS295 3.3 27.2 1.0
CB A:CYS301 3.5 31.3 1.0
CB A:CYS306 3.6 28.1 1.0
CB A:CYS310 3.7 24.1 1.0
C A:CYS306 3.8 28.1 1.0
CA A:CYS301 3.8 31.3 1.0
CB A:HIS295 3.9 27.2 1.0
CA A:CYS306 4.1 28.1 1.0
NE2 A:HIS295 4.1 27.2 1.0
N A:HIS295 4.2 27.2 1.0
CD2 A:HIS295 4.3 27.2 1.0
O A:THR293 4.4 27.2 1.0
N A:ILE307 4.7 24.8 1.0
CA A:HIS295 4.7 27.2 1.0
ND1 A:HIS309 4.7 23.6 1.0
N A:LEU302 4.7 32.7 1.0
N A:CYS301 4.8 31.3 1.0
N A:CYS310 4.8 24.1 1.0
CA A:CYS310 4.9 24.1 1.0
C A:CYS301 4.9 31.3 1.0

Zinc binding site 2 out of 2 in 7doi

Go back to Zinc Binding Sites List in 7doi
Zinc binding site 2 out of 2 in the Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Covid-19 Rna-Dependent Rna Polymerase Bound to Penciclovir. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:50.1
occ:1.00
CD2 A:HIS642 2.4 34.1 1.0
SG A:CYS487 2.5 33.0 1.0
SG A:CYS646 2.5 38.0 1.0
SG A:CYS645 2.5 39.2 1.0
CG A:HIS642 3.1 34.1 1.0
CB A:HIS642 3.4 34.1 1.0
NE2 A:HIS642 3.5 34.1 1.0
CB A:CYS645 3.5 39.2 1.0
CB A:CYS646 3.5 38.0 1.0
CB A:CYS487 3.6 33.0 1.0
N A:CYS487 3.8 33.0 1.0
C A:CYS645 3.9 39.2 1.0
N A:CYS646 4.0 38.0 1.0
CA A:HIS642 4.2 34.1 1.0
CE1 A:PHE571 4.2 30.8 1.0
CA A:CYS487 4.2 33.0 1.0
O A:CYS645 4.2 39.2 1.0
CA A:CYS646 4.3 38.0 1.0
CA A:CYS645 4.3 39.2 1.0
NZ A:LYS532 4.4 30.8 1.0
ND1 A:HIS642 4.4 34.1 1.0
CE1 A:HIS642 4.5 34.1 1.0
O A:HIS642 4.6 34.1 1.0
C A:GLY486 4.6 30.6 1.0
CD1 A:PHE571 4.7 30.8 1.0
CA A:GLY486 4.8 30.6 1.0
C A:HIS642 4.8 34.1 1.0
CE A:LYS532 4.9 30.8 1.0
N A:CYS645 4.9 39.2 1.0
CZ A:PHE571 5.0 30.8 1.0

Reference:

W.Yin, X.Luan, Z.Li, Y.Xie, Z.Zhou, J.Liu, M.Gao, X.Wang, F.Zhou, Q.Wang, Q.Wang, D.Shen, Y.Zhang, G.Tian, H.Aisa, D.Wei, Y.Jiang, G.Xiao, H.Jiang, L.Zhang, X.Yu, J.Shen, S.Zhang, H.Xu. Structural Basis For Repurpose and Design of Nucleotide Drugs For Treating Covid-19 To Be Published.
Page generated: Tue Oct 29 19:07:13 2024

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