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Zinc in PDB 7d6h: Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant

Enzymatic activity of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant

All present enzymatic activity of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant:
3.4.19.12;

Protein crystallography data

The structure of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant, PDB code: 7d6h was solved by J.Liu, Y.Wang, L.Pan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.10 / 1.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.801, 82.801, 134.408, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 17.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant (pdb code 7d6h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant, PDB code: 7d6h:

Zinc binding site 1 out of 1 in 7d6h

Go back to Zinc Binding Sites List in 7d6h
Zinc binding site 1 out of 1 in the Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:28.9
occ:1.00
SG A:CYS225 2.3 28.6 1.0
SG A:CYS227 2.3 28.5 1.0
SG A:CYS190 2.4 28.5 1.0
SG A:CYS193 2.4 33.7 1.0
CB A:CYS227 3.2 27.8 1.0
CB A:CYS225 3.3 28.1 1.0
CB A:CYS193 3.3 32.7 1.0
CB A:CYS190 3.3 24.9 1.0
N A:CYS193 3.9 31.3 1.0
N A:CYS227 4.1 31.1 1.0
CA A:CYS193 4.2 31.2 1.0
CB A:THR192 4.2 28.2 1.0
CA A:CYS227 4.2 31.2 1.0
CB A:LYS229 4.5 32.5 1.0
O A:HOH935 4.6 34.5 1.0
CA A:CYS225 4.6 27.2 1.0
CA A:CYS190 4.8 28.6 1.0
CG2 A:THR192 4.8 36.0 1.0
C A:THR192 4.8 34.1 1.0
CA A:THR192 4.9 28.9 1.0
C A:CYS225 4.9 28.5 1.0
N A:THR192 4.9 28.3 1.0
C A:CYS227 5.0 33.7 1.0
CG A:LYS229 5.0 42.7 1.0
N A:THR226 5.0 28.6 1.0

Reference:

J.Liu, Y.Wang, L.Pan. Crystal Structure of the Sars-Cov-2 Papain-Like Protease (Plpro) C112S Mutant To Be Published.
Page generated: Thu Aug 21 23:23:20 2025

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