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Zinc in PDB 7d6b: Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta- Glucosidase with Delta-Gluconolactone

Enzymatic activity of Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta- Glucosidase with Delta-Gluconolactone

All present enzymatic activity of Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta- Glucosidase with Delta-Gluconolactone:
3.2.1.21;

Protein crystallography data

The structure of Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta- Glucosidase with Delta-Gluconolactone, PDB code: 7d6b was solved by S.Baiya, S.Pengthaisong, J.R.Ketudat Cairns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.109, 83.831, 207.448, 90, 90, 90
R / Rfree (%) 14.5 / 17.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta- Glucosidase with Delta-Gluconolactone (pdb code 7d6b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta- Glucosidase with Delta-Gluconolactone, PDB code: 7d6b:

Zinc binding site 1 out of 1 in 7d6b

Go back to Zinc Binding Sites List in 7d6b
Zinc binding site 1 out of 1 in the Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta- Glucosidase with Delta-Gluconolactone


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta- Glucosidase with Delta-Gluconolactone within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn602

b:16.3
occ:1.00
 OE2 A:GLU53 1.9 15.1 1.0
OD2 B:ASP82 1.9 13.5 1.0
NE2 A:HIS85 2.1 14.6 1.0
ND1 B:HIS85 2.1 15.4 1.0
CG B:ASP82 2.6 13.9 1.0
OD1 B:ASP82 2.6 13.1 1.0
CD A:GLU53 2.8 16.2 1.0
CD2 A:HIS85 3.0 14.4 1.0
OE1 A:GLU53 3.1 16.6 1.0
CE1 A:HIS85 3.1 14.5 1.0
CG B:HIS85 3.1 15.8 1.0
CE1 B:HIS85 3.1 15.9 1.0
CB B:HIS85 3.4 16.1 1.0
CB B:ASP82 4.1 14.0 1.0
CG A:HIS85 4.2 14.3 1.0
ND1 A:HIS85 4.2 14.5 1.0
NE2 B:HIS85 4.2 16.0 1.0
CG A:GLU53 4.2 16.3 1.0
CD2 B:HIS85 4.2 15.9 1.0
CE2 A:TYR84 4.3 14.4 1.0
CD2 A:TYR84 4.4 13.9 1.0
O B:HOH863 4.5 13.6 1.0
NE B:ARG86 4.6 19.6 1.0
O A:HOH718 4.6 17.0 1.0
O B:HOH802 4.7 11.9 1.0
CB A:GLU53 4.7 16.4 1.0
O B:ASP82 4.8 13.9 1.0
CA B:HIS85 4.9 16.3 1.0

Reference:

S.Baiya, S.Pengthaisong, J.R.Ketudat Cairns. Crystal Structure of Oryza Sativa OS4BGLU18 Monolignol Beta-Glucosidase Plos One 2021.
ISSN: ESSN 1932-6203
Page generated: Thu Aug 21 23:23:11 2025

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