Zinc in PDB 7d5p: Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody

The structure of Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody, PDB code: 7d5p was solved by S.Kumar, A.Athreya, A.Penmatsa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.96 / 3.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	71.212, 139.875, 118.034, 90, 106.03, 90
R / Rfree (%)	29.7 / 31.8

The binding sites of Zinc atom in the Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody (pdb code 7d5p). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody, PDB code: 7d5p:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:112.8 occ:1.00 SG C:CYS40 2.1 114.2 1.0 ND1 C:HIS116 2.1 154.9 1.0 OD2 C:ASP106 2.4 132.3 1.0 NE2 C:HIS109 2.5 146.9 1.0 CB C:CYS40 2.8 111.0 1.0 OD1 C:ASP106 2.8 128.9 1.0 CG C:ASP106 2.9 135.7 1.0 CE1 C:HIS116 2.9 160.3 1.0 CG C:HIS116 3.2 151.3 1.0 CD2 C:HIS109 3.3 143.4 1.0 N C:CYS40 3.3 107.1 1.0 CE1 C:HIS109 3.5 145.4 1.0 CA C:CYS40 3.6 107.9 1.0 CB C:HIS116 3.6 146.8 1.0 NE2 C:HIS116 4.1 160.1 1.0 N C:HIS116 4.2 138.9 1.0 CD2 C:HIS116 4.2 156.1 1.0 CB C:ASP106 4.3 139.7 1.0 C C:TYR39 4.4 105.0 1.0 CG C:HIS109 4.4 135.8 1.0 ND1 C:HIS109 4.5 142.4 1.0 CA C:HIS116 4.6 140.4 1.0 C C:CYS40 4.6 105.5 1.0 O C:CYS40 4.7 102.3 1.0 CA C:TYR39 4.7 102.0 1.0 O C:SER114 4.8 134.2 1.0 C C:VAL115 4.9 137.7 1.0 OH C:TYR122 4.9 113.2 1.0

Zinc binding site 2 out of 2 in the Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn201 b:113.5 occ:1.00 ND1 D:HIS116 2.1 142.9 1.0 SG D:CYS40 2.2 108.3 1.0 NE2 D:HIS109 2.2 135.7 1.0 OD2 D:ASP106 2.3 116.9 1.0 OD1 D:ASP106 2.8 113.9 1.0 CG D:ASP106 2.8 118.3 1.0 CE1 D:HIS116 2.9 147.9 1.0 CB D:CYS40 2.9 114.9 1.0 CD2 D:HIS109 3.0 134.4 1.0 CE1 D:HIS109 3.3 135.4 1.0 CG D:HIS116 3.3 139.4 1.0 N D:CYS40 3.3 112.7 1.0 CA D:CYS40 3.7 113.6 1.0 CB D:HIS116 3.8 132.6 1.0 NE2 D:HIS116 4.1 149.6 1.0 CG D:HIS109 4.1 132.0 1.0 ND1 D:HIS109 4.2 134.1 1.0 CB D:ASP106 4.3 120.6 1.0 C D:TYR39 4.3 113.3 1.0 CD2 D:HIS116 4.3 145.4 1.0 N D:HIS116 4.4 119.2 1.0 CA D:TYR39 4.6 114.8 1.0 C D:CYS40 4.7 112.1 1.0 O D:CYS40 4.8 111.4 1.0 CA D:HIS116 4.8 124.8 1.0 O D:SER114 4.8 135.9 1.0 O D:PHE107 4.9 125.2 1.0

S.Kumar, A.Athreya, A.Penmatsa. Structure of Norc Transporter in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody To Be Published.