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Zinc in PDB 7d3x: Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A

Enzymatic activity of Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A

All present enzymatic activity of Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A:
3.5.4.38;

Zinc Binding Sites:

The binding sites of Zinc atom in the Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A (pdb code 7d3x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A, PDB code: 7d3x:

Zinc binding site 1 out of 1 in 7d3x

Go back to Zinc Binding Sites List in 7d3x
Zinc binding site 1 out of 1 in the Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS70 2.0 0.0 1.0
SG A:CYS101 2.3 0.0 1.0
SG A:CYS106 2.3 0.0 1.0
CE1 A:HIS70 3.0 0.0 1.0
HB2 A:HIS70 3.0 0.0 1.0
HB2 A:CYS101 3.0 0.0 1.0
CG A:HIS70 3.1 0.0 1.0
HB2 A:CYS106 3.2 0.0 1.0
HE1 A:HIS70 3.2 0.0 1.0
CB A:CYS101 3.3 0.0 1.0
CB A:CYS106 3.4 0.0 1.0
CB A:HIS70 3.4 0.0 1.0
HB3 A:HIS70 3.6 0.0 1.0
HB3 A:CYS101 3.9 0.0 1.0
HB3 A:CYS106 4.0 0.0 1.0
NE2 A:HIS70 4.1 0.0 1.0
H A:ALA107 4.2 0.0 1.0
CD2 A:HIS70 4.2 0.0 1.0
H A:PHE102 4.2 0.0 1.0
HB3 A:GLN72 4.2 0.0 1.0
O A:PHE102 4.4 0.0 1.0
CA A:CYS101 4.4 0.0 1.0
H A:CYS106 4.4 0.0 1.0
HA A:CYS101 4.5 0.0 1.0
N A:ALA107 4.5 0.0 1.0
CA A:CYS106 4.5 0.0 1.0
HH21 A:ARG69 4.5 0.0 1.0
H A:HIS70 4.6 0.0 1.0
N A:PHE102 4.7 0.0 1.0
C A:CYS106 4.7 0.0 1.0
HB3 A:TRP104 4.8 0.0 1.0
C A:CYS101 4.8 0.0 1.0
CA A:HIS70 4.9 0.0 1.0
HB2 A:ALA107 4.9 0.0 1.0
N A:CYS106 4.9 0.0 1.0
HG3 A:ARG69 4.9 0.0 1.0
HH22 A:ARG69 5.0 0.0 1.0

Reference:

Y.P.Liu, W.X.Lan, C.X.Wang, C.Y.Cao. Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3 To Be Published.
Page generated: Tue Oct 29 18:38:30 2024

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