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Zinc in PDB 7d0q: Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A

Enzymatic activity of Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A

All present enzymatic activity of Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A:
2.3.1.48;

Protein crystallography data

The structure of Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A, PDB code: 7d0q was solved by W.Li, J.Ding, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 2.21
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 126.871, 39.599, 87.9, 90, 122.89, 90
R / Rfree (%) 18.6 / 24.4

Other elements in 7d0q:

The structure of Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A (pdb code 7d0q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A, PDB code: 7d0q:

Zinc binding site 1 out of 1 in 7d0q

Go back to Zinc Binding Sites List in 7d0q
Zinc binding site 1 out of 1 in the Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human HBO1-BRPF2 in Complex with Butyryl-Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:62.3
occ:1.00
 NE2 A:HIS384 2.0 62.0 1.0
SG A:CYS368 2.3 50.9 1.0
SG A:CYS388 2.3 59.7 1.0
SG A:CYS371 2.3 54.9 1.0
CD2 A:HIS384 3.0 64.7 1.0
CE1 A:HIS384 3.1 68.6 1.0
CB A:CYS388 3.1 64.3 1.0
CB A:CYS368 3.1 52.2 1.0
CB A:CYS371 3.3 51.0 1.0
N A:CYS371 3.8 51.0 1.0
CA A:CYS371 4.1 46.5 1.0
CG A:HIS384 4.1 61.5 1.0
ND1 A:HIS384 4.2 65.4 1.0
CA A:CYS388 4.5 59.1 1.0
CA A:CYS368 4.6 57.7 1.0
C A:CYS371 4.8 43.0 1.0
N A:LEU372 4.9 46.7 1.0
C A:PHE370 4.9 49.6 1.0
SD A:MET385 4.9 64.3 1.0
CB A:LYS373 5.0 53.9 1.0

Reference:

Y.Xiao, W.Li, L.Pan, H.Yang, L.Zhang, J.Chen, W.Wei, L.Lu, J.Ye, J.Li, G.Li, Y.Zhang, M.Tan, J.Ding, J.Wong. HBO1 Is A Versatile Histone Acyltransferase Critical For Promoter Histone Acylations To Be Published.
Page generated: Tue Oct 29 18:33:02 2024

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