Zinc in PDB 7cph: Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis

All present enzymatic activity of Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis:
3.5.4.33;

The structure of Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis, PDB code: 7cph was solved by V.Gaded, J.Mariam, R.Anand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.19 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.53, 41.25, 202.08, 90, 90, 90
R / Rfree (%)	17.7 / 24

The binding sites of Zinc atom in the Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis (pdb code 7cph). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis, PDB code: 7cph:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:26.6 occ:1.00 ND1 A:HIS53 2.1 26.9 1.0 O A:HOH301 2.1 23.3 1.0 SG A:CYS86 2.3 23.1 1.0 SG A:CYS83 2.3 22.7 1.0 CE1 A:HIS53 3.0 28.1 1.0 CG A:HIS53 3.2 24.1 1.0 CB A:CYS83 3.3 24.5 1.0 CB A:CYS86 3.3 20.5 1.0 CB A:HIS53 3.5 22.4 1.0 N A:CYS83 3.7 26.2 1.0 OE2 A:GLU55 3.8 26.7 1.0 N A:CYS86 4.0 21.1 1.0 CA A:CYS83 4.1 22.4 1.0 NE2 A:HIS53 4.2 27.8 1.0 CD A:GLU55 4.2 26.8 1.0 CD2 A:HIS53 4.2 22.9 1.0 CA A:CYS86 4.2 21.6 1.0 CE A:MET85 4.3 27.0 1.0 OE1 A:GLU55 4.3 28.5 1.0 C A:CYS83 4.6 20.1 1.0 O A:CYS83 4.7 19.3 1.0 C A:PRO82 4.8 23.2 1.0 CA A:PRO82 5.0 24.0 1.0 CD1 B:LEU92 5.0 26.2 1.0 CB A:MET85 5.0 20.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Trna Adenosine Deaminase From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:29.0 occ:1.00 ND1 B:HIS53 2.1 27.9 1.0 O B:HOH302 2.2 22.5 1.0 SG B:CYS86 2.2 27.0 1.0 SG B:CYS83 2.4 27.5 1.0 CE1 B:HIS53 3.0 28.8 1.0 CG B:HIS53 3.2 23.8 1.0 CB B:CYS86 3.4 20.7 1.0 CB B:CYS83 3.4 24.3 1.0 CB B:HIS53 3.5 22.1 1.0 O B:HOH320 3.8 30.2 1.0 OE2 B:GLU55 3.9 26.9 1.0 N B:CYS83 3.9 23.8 1.0 N B:CYS86 4.0 22.0 1.0 CE B:MET85 4.0 32.5 1.0 NE2 B:HIS53 4.2 30.1 1.0 CA B:CYS83 4.2 26.0 1.0 CD2 B:HIS53 4.2 25.2 1.0 CA B:CYS86 4.3 23.1 1.0 OE1 B:GLU55 4.3 28.1 1.0 CD B:GLU55 4.3 28.7 1.0 C B:CYS83 4.7 25.5 1.0 CB B:MET85 4.7 27.2 1.0 CD1 A:LEU92 4.7 29.9 1.0 O B:CYS83 4.8 23.2 1.0 C B:MET85 4.9 23.7 1.0

J.Mariam, A.Hoskere Ashoka, V.Gaded, F.Ali, H.Malvi, A.Das, R.Anand. Deciphering Protein Microenvironment By Using A Cysteine Specific Switch-on Fluorescent Probe. Org.Biomol.Chem. 2021.
ISSN: ESSN 1477-0539
PubMed: 34037063
DOI: 10.1039/D1OB00698C