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Zinc in PDB 7b2i: Heterodimeric Trna-Guanine Transglycosylase From Mouse

Enzymatic activity of Heterodimeric Trna-Guanine Transglycosylase From Mouse

All present enzymatic activity of Heterodimeric Trna-Guanine Transglycosylase From Mouse:
2.4.2.29;

Protein crystallography data

The structure of Heterodimeric Trna-Guanine Transglycosylase From Mouse, PDB code: 7b2i was solved by M.Sebastiani, A.Heine, K.Reuter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.17 / 1.65
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 100.587, 100.587, 202.235, 90, 90, 90
R / Rfree (%) 17.7 / 20.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Heterodimeric Trna-Guanine Transglycosylase From Mouse (pdb code 7b2i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Heterodimeric Trna-Guanine Transglycosylase From Mouse, PDB code: 7b2i:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7b2i

Go back to Zinc Binding Sites List in 7b2i
Zinc binding site 1 out of 2 in the Heterodimeric Trna-Guanine Transglycosylase From Mouse


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Heterodimeric Trna-Guanine Transglycosylase From Mouse within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:21.6
occ:1.00
ND1 A:HIS382 2.1 21.0 1.0
SG A:CYS356 2.3 23.2 1.0
SG A:CYS351 2.3 23.1 1.0
SG A:CYS353 2.3 21.4 1.0
CE1 A:HIS382 3.0 22.2 1.0
CB A:CYS351 3.2 22.5 1.0
CB A:CYS356 3.2 21.4 1.0
CG A:HIS382 3.2 19.4 1.0
CB A:CYS353 3.4 25.7 1.0
CB A:HIS382 3.6 18.1 1.0
N A:CYS356 4.0 21.7 1.0
CA A:HIS382 4.0 19.4 1.0
NE2 A:HIS382 4.2 19.8 1.0
N A:CYS353 4.2 23.8 1.0
CA A:CYS356 4.2 19.7 1.0
CD2 A:HIS382 4.3 18.9 1.0
CA A:CYS353 4.3 21.4 1.0
CA A:CYS351 4.5 24.2 1.0
C A:CYS351 4.7 26.2 1.0
O A:HIS382 4.8 19.6 1.0
O A:HOH686 4.8 30.2 1.0
C A:CYS353 4.9 21.9 1.0
O A:CYS353 4.9 24.1 1.0
C A:HIS382 4.9 19.8 1.0
CB A:VAL348 4.9 21.8 1.0
CB A:CYS355 5.0 22.4 1.0

Zinc binding site 2 out of 2 in 7b2i

Go back to Zinc Binding Sites List in 7b2i
Zinc binding site 2 out of 2 in the Heterodimeric Trna-Guanine Transglycosylase From Mouse


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Heterodimeric Trna-Guanine Transglycosylase From Mouse within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn501

b:18.8
occ:1.00
ND1 C:HIS348 2.1 19.7 1.0
SG C:CYS317 2.3 20.6 1.0
SG C:CYS322 2.3 20.0 1.0
SG C:CYS319 2.3 18.8 1.0
CE1 C:HIS348 2.9 18.0 1.0
CB C:CYS317 3.2 19.6 1.0
CG C:HIS348 3.2 16.5 1.0
CB C:CYS322 3.3 17.4 1.0
CB C:CYS319 3.3 19.6 1.0
CB C:HIS348 3.7 17.3 1.0
N C:CYS322 3.9 17.5 1.0
CA C:HIS348 4.1 16.5 1.0
NE2 C:HIS348 4.1 17.3 1.0
CA C:CYS322 4.2 18.2 1.0
N C:CYS319 4.2 21.2 1.0
CA C:CYS319 4.3 18.9 1.0
CD2 C:HIS348 4.3 17.8 1.0
CA C:CYS317 4.5 20.7 1.0
O C:CYS319 4.6 20.9 1.0
O C:CYS317 4.6 24.8 1.0
O C:HOH671 4.6 20.2 1.0
C C:CYS317 4.6 23.8 1.0
C C:CYS319 4.7 19.6 1.0
O C:HIS348 4.7 17.4 1.0
CB C:THR321 4.7 18.6 1.0
C C:HIS348 4.9 18.0 1.0
C C:THR321 4.9 18.2 1.0

Reference:

M.Sebastiani, A.Heine, K.Reuter. Heterodimeric Trna-Guanine Transglycosylase From Mouse To Be Published.
Page generated: Tue Oct 29 17:18:14 2024

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