Zinc in PDB 7a9t: Racemic Compound of Rna Duplexes.

The structure of Racemic Compound of Rna Duplexes., PDB code: 7a9t was solved by W.Rypniewski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.00 / 1.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	21.109, 26.722, 38.971, 105.86, 97.6, 90.86
R / Rfree (%)	18.8 / 24.8

The binding sites of Zinc atom in the Racemic Compound of Rna Duplexes. (pdb code 7a9t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Racemic Compound of Rna Duplexes., PDB code: 7a9t:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:15.8 occ:0.60 O K:HOH223 2.0 13.3 1.0 O K:HOH205 2.0 14.7 1.0 O K:HOH213 2.0 13.6 1.0 O K:HOH222 2.1 14.8 1.0 N7 K:G82 2.1 11.1 1.0 O K:HOH235 2.3 22.4 1.0 C8 K:G82 3.0 10.5 1.0 C5 K:G82 3.2 10.5 1.0 O6 K:G82 3.5 11.7 1.0 C6 K:G82 3.7 10.6 1.0 O K:HOH219 4.0 15.6 1.0 OP2 K:G82 4.0 11.5 1.0 N9 K:G82 4.2 11.1 1.0 C4 K:G82 4.3 10.9 1.0 O6 K:G83 4.5 13.4 1.0 O K:HOH209 4.5 26.2 1.0 N7 K:G81 4.6 13.7 1.0 N7 K:G83 4.6 14.4 1.0 OP2 K:G81 4.6 18.2 1.0 O L:HOH233 4.6 38.6 1.0 O5' K:G82 4.8 11.2 1.0 C8 K:G81 4.9 12.8 1.0 C5 K:G81 4.9 12.3 1.0

Zinc binding site 2 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn102 b:37.1 occ:0.80 O K:HOH202 1.8 22.8 1.0 O K:HOH221 2.2 19.1 1.0 O K:HOH201 2.4 33.7 1.0 O K:HOH234 2.4 40.9 1.0 O K:HOH214 3.2 26.4 1.0 N7 K:G85 3.6 19.2 1.0 O M:HOH215 3.7 28.4 1.0 O K:HOH204 4.1 28.1 1.0 O6 K:G85 4.1 16.5 1.0 O6 K:G86 4.1 10.7 1.0 N7 K:G86 4.4 10.1 1.0 C5 K:G85 4.4 16.7 1.0 C8 K:G85 4.6 16.7 1.0 C6 K:G85 4.6 16.2 1.0 O2 M:0C79 4.7 11.4 1.0 OP2 K:G85 4.9 22.9 1.0 C6 K:G86 4.9 10.5 1.0 C1' M:0C79 4.9 16.4 1.0

Zinc binding site 3 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:50.0 occ:1.00 O L:HOH205 1.6 14.9 1.0 O L:HOH212 2.1 26.9 1.0 O L:HOH219 2.2 17.7 1.0 O L:HOH238 2.3 30.4 1.0 O L:HOH202 3.1 21.3 1.0 N7 L:G96 3.9 12.6 1.0 O L:HOH225 4.1 20.3 1.0 O6 L:G97 4.1 12.2 1.0 N7 L:G97 4.3 12.5 1.0 C8 L:G96 4.6 12.8 1.0 OP2 L:G96 4.7 12.8 1.0 C5 L:G96 4.8 12.5 1.0 O6 L:G96 4.8 14.2 1.0 C6 L:G97 4.9 12.8 1.0 O4 L:U95 5.0 11.8 1.0

Zinc binding site 4 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn102 b:37.4 occ:0.60 O L:HOH220 2.1 17.0 1.0 O L:HOH207 2.4 34.3 1.0 O L:HOH236 3.6 39.3 1.0 OP2 L:U95 4.2 11.8 1.0 OP1 L:U95 4.2 12.1 1.0 OP1 L:C94 4.3 11.1 1.0 P L:U95 4.7 11.8 1.0

Zinc binding site 5 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:25.7 occ:0.60 O M:HOH224 2.1 19.5 1.0 O M:HOH217 2.2 20.2 1.0 N7 M:0G82 2.2 10.9 1.0 O M:HOH216 2.2 15.6 1.0 O M:HOH239 2.2 26.4 1.0 O M:HOH228 2.2 25.8 1.0 C8 M:0G82 3.1 10.9 1.0 C5 M:0G82 3.3 12.0 1.0 O6 M:0G82 3.6 14.0 1.0 C6 M:0G82 3.8 13.9 1.0 OP1 M:0G82 3.9 13.0 1.0 O M:HOH243 4.0 38.1 1.0 O M:HOH223 4.0 19.1 1.0 O N:HOH223 4.1 26.0 1.0 O M:HOH233 4.2 26.3 1.0 N9 M:0G82 4.3 11.1 1.0 C4 M:0G82 4.4 11.7 1.0 O M:HOH242 4.4 36.2 1.0 N7 M:0G81 4.4 13.6 1.0 O6 M:0G83 4.6 14.8 1.0 C8 M:0G81 4.7 13.2 1.0 N7 M:0G83 4.8 11.8 1.0 C5 M:0G81 4.8 12.8 1.0 OP1 M:0G81 4.8 17.0 1.0 O5' M:0G82 4.9 11.9 1.0

Zinc binding site 6 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn102 b:29.7 occ:0.80 O M:HOH221 2.0 17.7 1.0 O M:HOH240 2.0 22.0 1.0 O M:HOH201 2.2 28.7 1.0 O M:HOH202 2.3 23.6 1.0 N7 M:0G85 2.4 13.4 1.0 C8 M:0G85 3.3 12.5 1.0 C5 M:0G85 3.5 13.4 1.0 O6 M:0G85 3.7 14.5 1.0 C6 M:0G85 4.0 14.5 1.0 OP1 M:0G85 4.0 14.6 1.0 N7 M:0G86 4.2 12.0 1.0 C5 M:0C84 4.4 12.2 1.0 C4 M:0C84 4.4 12.5 1.0 N9 M:0G85 4.5 12.6 1.0 N4 M:0C84 4.6 12.1 1.0 C4 M:0G85 4.6 13.2 1.0 O6 M:0G86 4.6 11.2 1.0 N3 M:0C84 4.8 12.5 1.0 C6 M:0C84 4.8 12.0 1.0 O5' M:0G85 4.8 13.5 1.0 O M:HOH236 4.9 36.8 1.0

Zinc binding site 7 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:43.3 occ:1.00 O N:HOH233 2.0 33.8 1.0 O N:HOH230 2.1 19.1 1.0 O N:HOH205 2.1 28.5 1.0 O N:HOH245 2.2 22.2 1.0 O L:HOH235 2.2 28.9 1.0 O N:HOH204 2.3 17.1 1.0 O N:HOH219 3.9 48.7 1.0 N7 N:0G96 4.0 16.6 1.0 O6 N:0G97 4.3 11.5 1.0 N7 N:0G97 4.4 10.4 1.0 O L:HOH231 4.6 32.7 1.0 C8 N:0G96 4.6 16.9 1.0 OP1 N:0G96 4.7 22.8 1.0 C5 N:0U95 4.8 15.7 1.0 C4 N:0U95 4.8 15.3 1.0 O4 N:0U95 4.8 14.5 1.0 C5 N:0G96 5.0 15.9 1.0

W.Rypniewski, A.Kiliszek, L.Blaszczyk, M.Bejger. Racemic Compound of Rna Duplexes. To Be Published.