Zinc in PDB 6zw3: Racemic Compound of Rna Duplexes.

The structure of Racemic Compound of Rna Duplexes., PDB code: 6zw3 was solved by W.Rypniewski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.87 / 1.52
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	20.95, 26.49, 38.66, 106.03, 96.06, 92.6
R / Rfree (%)	21.3 / 27.2

The binding sites of Zinc atom in the Racemic Compound of Rna Duplexes. (pdb code 6zw3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Racemic Compound of Rna Duplexes., PDB code: 6zw3:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:21.2 occ:0.60 O K:HOH225 2.0 31.9 1.0 N7 K:0G82 2.0 16.3 1.0 O K:HOH226 2.0 18.9 1.0 O K:HOH240 2.3 19.9 1.0 O K:HOH204 2.3 22.4 1.0 O K:HOH201 2.3 22.1 1.0 C8 K:0G82 2.9 17.7 1.0 C5 K:0G82 3.1 16.5 1.0 O K:HOH237 3.4 53.3 1.0 O6 K:0G82 3.6 17.6 1.0 C6 K:0G82 3.7 16.9 1.0 OP1 K:0G82 3.8 20.1 1.0 O K:HOH231 4.0 37.2 1.0 O K:HOH218 4.1 27.6 1.0 N9 K:0G82 4.1 17.4 1.0 C4 K:0G82 4.2 16.1 1.0 N7 K:0G81 4.5 22.3 1.0 O6 K:0G83 4.6 23.9 1.0 OP1 K:0G81 4.6 28.1 1.0 N7 K:0G83 4.7 19.3 1.0 C8 K:0G81 4.8 20.8 1.0 O5' K:0G82 4.8 17.2 1.0 C5 K:0G81 4.9 21.1 1.0 P K:0G82 4.9 19.3 1.0

Zinc binding site 2 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn102 b:44.2 occ:1.00 O K:HOH219 2.0 21.4 1.0 O K:HOH202 2.1 35.1 1.0 O K:HOH215 2.2 19.5 1.0 O K:HOH242 2.5 45.1 1.0 O K:HOH203 3.6 30.2 1.0 N7 K:0G85 3.7 24.7 1.0 O6 K:0G85 4.0 23.3 1.0 O K:HOH223 4.0 28.7 1.0 O6 K:0G86 4.0 17.9 1.0 O M:HOH211 4.1 36.0 1.0 N7 K:0G86 4.3 17.6 1.0 C5 K:0G85 4.4 21.0 1.0 C6 K:0G85 4.5 20.7 1.0 O2 M:C79 4.5 19.1 1.0 C8 K:0G85 4.7 22.0 1.0 N4 K:0C84 4.8 19.3 1.0 C6 K:0G86 4.9 16.7 1.0 C1' M:C79 4.9 22.1 1.0 C5 K:0C84 5.0 19.7 1.0 C5 K:0G86 5.0 17.0 1.0

Zinc binding site 3 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:36.5 occ:1.00 O L:HOH204 1.9 34.5 1.0 O L:HOH206 2.1 22.9 1.0 O L:HOH241 2.1 33.6 1.0 O L:HOH226 2.2 25.7 1.0 O L:HOH248 2.3 25.9 1.0 O L:HOH239 3.8 35.7 1.0 O6 L:0G97 4.0 17.8 1.0 N7 L:0G96 4.0 19.3 1.0 O L:HOH219 4.1 36.7 1.0 N7 L:0G97 4.3 17.4 1.0 C8 L:0G96 4.8 19.2 1.0 C6 L:0G97 4.8 16.5 1.0 OP1 L:0G96 4.9 21.9 1.0 C5 L:0G97 5.0 16.1 1.0 O6 L:0G96 5.0 20.6 1.0

Zinc binding site 4 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn102 b:58.3 occ:1.00 O L:HOH228 2.3 19.3 1.0 O L:HOH227 2.4 36.4 1.0 O L:HOH237 3.8 41.3 1.0 OP2 L:0U95 4.1 19.1 1.0 OP1 L:0U95 4.2 17.5 1.0 OP2 L:0C94 4.4 18.3 1.0 P L:0U95 4.7 19.0 1.0

Zinc binding site 5 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:21.4 occ:0.60 O M:HOH229 1.9 21.8 1.0 O M:HOH209 2.0 25.6 1.0 O M:HOH232 2.0 20.6 1.0 N7 M:G82 2.1 14.0 1.0 O M:HOH219 2.1 18.8 1.0 O M:HOH244 2.1 25.1 1.0 C8 M:G82 3.0 15.3 1.0 C5 M:G82 3.2 15.3 1.0 O6 M:G82 3.6 16.4 1.0 C6 M:G82 3.7 16.1 1.0 OP2 M:G82 3.9 16.7 1.0 O N:HOH234 4.0 27.8 1.0 O M:HOH216 4.0 26.1 1.0 O M:HOH226 4.0 28.6 1.0 O M:HOH238 4.0 39.8 1.0 N9 M:G82 4.2 14.9 1.0 C4 M:G82 4.3 14.9 1.0 O M:HOH247 4.4 33.2 1.0 N7 M:G81 4.4 18.2 1.0 O6 M:G83 4.6 18.8 1.0 OP2 M:G81 4.6 23.4 1.0 N7 M:G83 4.7 15.7 1.0 C8 M:G81 4.7 16.9 1.0 C5 M:G81 4.8 16.8 1.0 O M:HOH208 4.8 39.3 1.0 O5' M:G82 4.8 17.4 1.0

Zinc binding site 6 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn102 b:55.6 occ:1.00 O M:HOH233 1.9 28.4 1.0 O M:HOH245 2.0 30.6 1.0 O M:HOH210 2.1 29.2 1.0 O M:HOH201 2.3 35.4 1.0 O M:HOH246 2.3 26.5 1.0 N7 M:G85 2.8 18.4 1.0 O M:HOH225 3.0 47.6 1.0 C8 M:G85 3.7 17.6 1.0 C5 M:G85 3.8 16.8 1.0 O6 M:G85 3.9 18.0 1.0 C6 M:G85 4.2 17.3 1.0 N7 M:G86 4.3 16.5 1.0 O6 M:G86 4.3 17.0 1.0 C5 M:C84 4.3 16.9 1.0 C4 M:C84 4.4 16.5 1.0 OP2 M:G85 4.4 21.2 1.0 N4 M:C84 4.4 17.3 1.0 N9 M:G85 4.9 17.0 1.0 C6 M:C84 4.9 16.5 1.0 C4 M:G85 4.9 16.3 1.0

Zinc binding site 7 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:37.6 occ:1.00 O N:HOH223 2.0 23.3 1.0 O N:HOH220 2.0 29.0 1.0 O L:HOH244 2.1 23.5 1.0 O L:HOH235 2.2 33.7 1.0 O N:HOH248 2.2 22.1 1.0 O N:HOH217 2.5 41.2 1.0 O N:HOH213 4.1 62.6 1.0 N7 N:G96 4.2 21.0 1.0 O N:HOH205 4.2 46.5 1.0 O6 N:G97 4.2 18.3 1.0 O L:HOH240 4.3 35.9 1.0 N7 N:G97 4.3 16.6 1.0 O2 L:0C90 4.7 19.2 1.0 C8 N:G96 4.9 19.7 1.0 O4 N:U95 4.9 21.9 1.0 OP2 N:G96 4.9 25.5 1.0 C4 N:U95 4.9 20.0 1.0 C5 N:U95 4.9 20.5 1.0

W.Rypniewski, A.Kiliszek, L.Blaszczyk, M.Bejger. Racemic Compound of Rna Duplexes. To Be Published.