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Zinc in PDB 6znl: Cryo-Em Structure of the Dynactin Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of the Dynactin Complex (pdb code 6znl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryo-Em Structure of the Dynactin Complex, PDB code: 6znl:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 6znl

Go back to Zinc Binding Sites List in 6znl
Zinc binding site 1 out of 3 in the Cryo-Em Structure of the Dynactin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Dynactin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn501

b:44.2
occ:1.00
NH1 Y:ARG37 1.8 27.3 1.0
SG Y:CYS287 2.3 27.0 1.0
SG Y:CYS33 2.4 25.4 1.0
CZ Y:ARG37 2.7 27.3 1.0
CB Y:CYS30 2.9 28.4 1.0
NH2 Y:ARG37 3.1 27.3 1.0
SG Y:CYS30 3.5 28.4 1.0
CB Y:CYS287 3.6 27.0 1.0
CB Y:CYS33 3.9 25.4 1.0
NE Y:ARG37 3.9 27.3 1.0
N Y:CYS287 4.1 27.0 1.0
O Y:GLU35 4.3 29.9 1.0
CA Y:CYS30 4.3 28.4 1.0
CA Y:CYS287 4.4 27.0 1.0
N Y:CYS33 4.5 25.4 1.0
CB Y:GLN286 4.7 26.4 1.0
CA Y:CYS33 4.7 25.4 1.0
C Y:CYS30 4.7 28.4 1.0
O Y:CYS30 4.8 28.4 1.0
CB Y:CYS284 4.9 31.0 1.0
SG Y:CYS284 4.9 31.0 1.0

Zinc binding site 2 out of 3 in 6znl

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Zinc binding site 2 out of 3 in the Cryo-Em Structure of the Dynactin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the Dynactin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn502

b:81.6
occ:1.00
SG Y:CYS51 2.4 9.3 1.0
SG Y:CYS70 2.6 15.9 1.0
CB Y:CYS51 2.9 9.3 1.0
CB Y:CYS73 3.0 18.7 1.0
CB Y:CYS70 3.2 15.9 1.0
CB Y:CYS54 3.4 34.9 1.0
O Y:CYS54 3.5 34.9 1.0
N Y:CYS54 3.7 34.9 1.0
CA Y:CYS54 3.9 34.9 1.0
SG Y:CYS54 4.0 34.9 1.0
N Y:CYS73 4.1 18.7 1.0
SG Y:CYS73 4.1 18.7 1.0
CA Y:CYS73 4.2 18.7 1.0
C Y:CYS54 4.2 34.9 1.0
CA Y:CYS51 4.4 9.3 1.0
CA Y:CYS70 4.7 15.9 1.0
CB Y:SER53 4.7 26.9 1.0
C Y:SER53 4.8 26.9 1.0
C Y:CYS51 5.0 9.3 1.0

Zinc binding site 3 out of 3 in 6znl

Go back to Zinc Binding Sites List in 6znl
Zinc binding site 3 out of 3 in the Cryo-Em Structure of the Dynactin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of the Dynactin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn503

b:10.2
occ:1.00
SG Y:CYS114 1.9 14.8 1.0
SG Y:CYS76 2.8 18.0 1.0
SG Y:CYS111 3.1 13.2 1.0
CB Y:CYS76 3.3 18.0 1.0
CB Y:CYS79 3.3 23.5 1.0
N Y:CYS79 3.4 23.5 1.0
CB Y:CYS111 3.5 13.2 1.0
O Y:CYS79 3.6 23.5 1.0
CB Y:CYS114 3.7 14.8 1.0
CA Y:CYS79 3.7 23.5 1.0
C Y:CYS79 3.9 23.5 1.0
SG Y:CYS79 4.3 23.5 1.0
O Y:CYS114 4.5 14.8 1.0
N Y:CYS114 4.5 14.8 1.0
C Y:GLY78 4.5 37.6 1.0
CA Y:CYS114 4.5 14.8 1.0
CB Y:TRP116 4.7 10.5 1.0
CA Y:CYS76 4.7 18.0 1.0
CA Y:GLY78 4.8 37.6 1.0
C Y:CYS114 4.8 14.8 1.0
N Y:GLY78 4.8 37.6 1.0
CA Y:CYS111 5.0 13.2 1.0

Reference:

C.K.Lau, F.J.O'reilly, B.Santhanam, S.E.Lacey, J.Rappsilber, A.P.Carter. Cryo-Em Reveals the Complex Architecture of the Shoulder and Pointed End of Dynactin To Be Published.
Page generated: Tue Oct 29 15:48:16 2024

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