Zinc in PDB 6zce: Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex

The structure of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Iron	(Fe)	8 atoms

The binding sites of Zinc atom in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex (pdb code 6zce). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex, PDB code: 6zce:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1901 b:0.9 occ:1.00 O2' A:G1433 2.8 0.7 1.0 CB e:CYS39 3.2 0.2 1.0 C1' A:G1433 3.5 0.7 1.0 CB e:SER26 3.6 0.9 1.0 C2' A:G1433 3.7 0.7 1.0 CB e:CYS24 4.0 0.7 1.0 N3 A:G1433 4.2 0.7 1.0 O4' A:G1433 4.3 0.7 1.0 CB e:GLN41 4.5 0.8 1.0 N e:CYS42 4.5 0.2 1.0 N9 A:G1433 4.6 0.7 1.0 CA e:CYS39 4.6 0.7 1.0 CB e:CYS21 4.6 0.4 1.0 CB e:CYS42 4.7 0.3 1.0 CA e:SER26 4.8 1.0 1.0 O4' A:U1434 4.8 0.8 1.0 C4 A:G1433 4.8 0.7 1.0 N e:SER26 4.8 0.1 1.0 C4' A:G1433 4.9 0.7 1.0 C3' A:G1433 4.9 0.7 1.0

Zinc binding site 2 out of 4 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ b:Zn500 b:0.4 occ:1.00 CB b:CYS77 1.5 1.0 1.0 CA b:CYS77 2.5 0.3 1.0 N b:CYS77 2.7 1.0 1.0 CB b:CYS74 3.0 0.6 1.0 C b:CYS77 3.8 0.0 1.0 C b:SER76 3.8 0.5 1.0 N b:CYS74 3.9 0.1 1.0 CA b:CYS74 4.0 0.4 1.0 CB b:CYS26 4.0 0.0 1.0 N b:ALA78 4.3 0.0 1.0 N b:CYS26 4.4 0.7 1.0 CB b:CYS23 4.4 0.6 1.0 O b:SER76 4.5 1.0 1.0 CB b:ASN25 4.5 0.2 1.0 C b:CYS74 4.6 0.9 1.0 O b:CYS77 4.6 0.0 1.0 O b:VAL75 4.7 0.7 1.0 CA b:SER76 4.8 0.4 1.0 CA b:CYS26 4.9 0.7 1.0 N b:SER76 4.9 0.2 1.0 C b:VAL75 4.9 0.5 1.0 O b:CYS74 5.0 0.2 1.0

Zinc binding site 3 out of 4 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ c:Zn101 b:0.2 occ:1.00 O c:CYS59 3.1 1.0 1.0 CB c:THR61 3.1 0.9 1.0 C c:CYS59 3.6 0.0 1.0 CB c:CYS59 3.8 0.4 1.0 N c:THR61 3.8 0.5 1.0 CB c:CYS56 4.0 0.9 1.0 CA c:CYS59 4.1 0.3 1.0 CA c:THR61 4.1 0.3 1.0 N c:CYS59 4.3 0.9 1.0 C c:SER60 4.4 0.8 1.0 N c:SER60 4.4 0.1 1.0 N c:CYS56 4.5 0.9 1.0 CA c:CYS56 4.8 0.6 1.0 CA c:SER60 4.8 0.0 1.0 O c:ILE62 4.8 0.9 1.0 N c:ILE62 4.9 0.7 1.0

Zinc binding site 4 out of 4 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ g:Zn501 b:0.4 occ:1.00 CB g:CYS141 1.8 0.6 1.0 O g:VAL147 2.4 0.6 1.0 CB g:CYS144 3.0 0.1 1.0 CA g:CYS141 3.2 0.2 1.0 C g:VAL147 3.4 0.2 1.0 O g:CYS141 3.6 0.0 1.0 C g:CYS141 3.7 0.5 1.0 N g:TYR148 3.9 0.5 1.0 N g:CYS141 4.0 0.1 1.0 CA g:CYS144 4.2 0.7 1.0 CB g:TYR148 4.2 0.7 1.0 N g:CYS144 4.2 0.1 1.0 O g:SER146 4.3 0.8 1.0 O g:CYS144 4.5 0.1 1.0 CA g:VAL147 4.6 0.6 1.0 CA g:TYR148 4.6 0.1 1.0 N g:GLY142 4.7 0.5 1.0 N g:VAL147 4.8 0.1 1.0 C g:CYS144 4.8 0.1 1.0 C g:SER146 4.9 0.4 1.0

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.