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Zinc in PDB 6z9t: Transcription Termination Intermediate Complex 5

Enzymatic activity of Transcription Termination Intermediate Complex 5

All present enzymatic activity of Transcription Termination Intermediate Complex 5:
2.7.7.6;

Other elements in 6z9t:

The structure of Transcription Termination Intermediate Complex 5 also contains other interesting chemical elements:

Fluorine (F) 15 atoms
Magnesium (Mg) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Transcription Termination Intermediate Complex 5 (pdb code 6z9t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Transcription Termination Intermediate Complex 5, PDB code: 6z9t:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6z9t

Go back to Zinc Binding Sites List in 6z9t
Zinc binding site 1 out of 2 in the Transcription Termination Intermediate Complex 5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Transcription Termination Intermediate Complex 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn1502

b:0.8
occ:1.00
 SG Y:CYS72 2.4 0.7 1.0
SG Y:CYS85 2.5 0.1 1.0
SG Y:CYS70 2.7 0.8 1.0
SG Y:CYS88 2.8 0.9 1.0
CB Y:CYS85 3.2 0.1 1.0
CB Y:CYS88 3.3 0.9 1.0
CB Y:CYS72 3.8 0.7 1.0
CB Y:CYS70 3.9 0.8 1.0
N Y:CYS72 4.6 0.7 1.0
CA Y:CYS85 4.7 0.1 1.0
CA Y:CYS88 4.8 0.9 1.0
CA Y:CYS72 4.8 0.7 1.0
CB Y:LYS74 5.0 0.3 1.0

Zinc binding site 2 out of 2 in 6z9t

Go back to Zinc Binding Sites List in 6z9t
Zinc binding site 2 out of 2 in the Transcription Termination Intermediate Complex 5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Transcription Termination Intermediate Complex 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn1503

b:0.0
occ:1.00
 SG Y:CYS814 2.5 95.3 1.0
SG Y:CYS898 2.5 96.8 1.0
SG Y:CYS895 2.5 0.5 1.0
CB Y:CYS888 2.6 0.8 1.0
CB Y:CYS898 2.7 96.8 1.0
SG Y:CYS888 2.8 0.8 1.0
CA Y:CYS888 2.9 0.8 1.0
CB Y:CYS814 3.1 95.3 1.0
N Y:CYS888 3.9 0.8 1.0
CB Y:CYS895 3.9 0.5 1.0
CA Y:CYS898 4.0 96.8 1.0
C Y:CYS888 4.1 0.8 1.0
N Y:CYS814 4.1 95.3 1.0
N Y:CYS898 4.2 96.8 1.0
CA Y:CYS814 4.2 95.3 1.0
OG1 Y:THR816 4.4 0.7 1.0
N Y:ASP889 4.4 99.3 1.0
N Y:CYS895 4.5 0.5 1.0
C Y:SER887 4.6 0.9 1.0
O Y:SER887 4.6 0.9 1.0
O Y:CYS895 4.6 0.5 1.0
CA Y:CYS895 4.7 0.5 1.0
C Y:CYS898 4.8 96.8 1.0
NH1 Y:ARG883 4.9 1.0 1.0
O Y:SER884 4.9 97.5 1.0
C Y:CYS895 5.0 0.5 1.0
O Y:CYS888 5.0 0.8 1.0

Reference:

N.Said, T.Hilal, B.Loll, M.C.Wahl. Snapshots Along A Factor-Mediated, Elongation Complex-Dependent Path to Transcription Termination To Be Published.
Page generated: Tue Oct 29 15:34:55 2024

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