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Zinc in PDB 6z0v: Cryoem Structure of the Chikungunya Virus NSP1 Complex

Enzymatic activity of Cryoem Structure of the Chikungunya Virus NSP1 Complex

All present enzymatic activity of Cryoem Structure of the Chikungunya Virus NSP1 Complex:
3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13;

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Cryoem Structure of the Chikungunya Virus NSP1 Complex (pdb code 6z0v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Cryoem Structure of the Chikungunya Virus NSP1 Complex, PDB code: 6z0v:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 6z0v

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Zinc binding site 1 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:87.0
occ:1.00
OE2 A:GLU129 1.8 66.7 1.0
NE2 A:HIS79 2.0 61.4 1.0
SG A:CYS141 2.4 58.9 1.0
SG A:CYS134 2.4 66.0 1.0
CB A:CYS134 2.4 66.0 1.0
CE1 A:HIS79 2.9 61.4 1.0
CD2 A:HIS79 3.0 61.4 1.0
CD A:GLU129 3.0 66.7 1.0
CB A:CYS141 3.4 58.9 1.0
CG2 A:VAL81 3.5 60.2 1.0
OE1 A:GLU129 3.6 66.7 1.0
CA A:CYS134 3.9 66.0 1.0
ND1 A:HIS79 4.0 61.4 1.0
CG A:HIS79 4.1 61.4 1.0
CB A:GLN143 4.2 58.7 1.0
CG A:GLU129 4.2 66.7 1.0
CA A:CYS141 4.3 58.9 1.0
CB A:VAL81 4.3 60.2 1.0
CG1 A:VAL81 4.4 60.2 1.0
CA A:VAL81 4.5 60.2 1.0
N A:ARG142 4.6 60.9 1.0
N A:CYS134 4.6 66.0 1.0
N A:GLN143 4.7 58.7 1.0
O A:PHE133 4.7 67.6 1.0
C A:CYS134 4.9 66.0 1.0
C A:PHE133 4.9 67.6 1.0
C A:CYS141 4.9 58.9 1.0

Zinc binding site 2 out of 12 in 6z0v

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Zinc binding site 2 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1001

b:79.9
occ:1.00
OE2 C:GLU129 1.8 67.1 1.0
NE2 C:HIS79 2.0 58.7 1.0
SG C:CYS141 2.4 55.0 1.0
SG C:CYS134 2.4 63.7 1.0
CB C:CYS134 2.5 63.7 1.0
CE1 C:HIS79 2.9 58.7 1.0
CD2 C:HIS79 2.9 58.7 1.0
CD C:GLU129 3.0 67.1 1.0
CB C:CYS141 3.4 55.0 1.0
CG2 C:VAL81 3.4 58.3 1.0
OE1 C:GLU129 3.6 67.1 1.0
CA C:CYS134 3.9 63.7 1.0
ND1 C:HIS79 4.0 58.7 1.0
CG C:HIS79 4.1 58.7 1.0
CB C:GLN143 4.1 58.1 1.0
CG C:GLU129 4.1 67.1 1.0
CA C:CYS141 4.3 55.0 1.0
CB C:VAL81 4.3 58.3 1.0
CG1 C:VAL81 4.4 58.3 1.0
CA C:VAL81 4.5 58.3 1.0
N C:ARG142 4.6 59.5 1.0
N C:CYS134 4.6 63.7 1.0
N C:GLN143 4.7 58.1 1.0
O C:PHE133 4.7 66.2 1.0
C C:CYS134 4.9 63.7 1.0
C C:PHE133 4.9 66.2 1.0
C C:CYS141 4.9 55.0 1.0

Zinc binding site 3 out of 12 in 6z0v

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Zinc binding site 3 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1001

b:78.8
occ:1.00
OE2 E:GLU129 1.8 67.9 1.0
NE2 E:HIS79 1.9 58.1 1.0
SG E:CYS141 2.3 57.5 1.0
CB E:CYS134 2.4 64.6 1.0
SG E:CYS134 2.4 64.6 1.0
CE1 E:HIS79 2.9 58.1 1.0
CD2 E:HIS79 3.0 58.1 1.0
CD E:GLU129 3.0 67.9 1.0
CB E:CYS141 3.4 57.5 1.0
CG2 E:VAL81 3.5 57.8 1.0
OE1 E:GLU129 3.6 67.9 1.0
CA E:CYS134 3.9 64.6 1.0
ND1 E:HIS79 4.0 58.1 1.0
CG E:HIS79 4.1 58.1 1.0
CB E:GLN143 4.1 58.6 1.0
CG E:GLU129 4.2 67.9 1.0
CA E:CYS141 4.3 57.5 1.0
CB E:VAL81 4.3 57.8 1.0
CG1 E:VAL81 4.4 57.8 1.0
CA E:VAL81 4.5 57.8 1.0
N E:CYS134 4.6 64.6 1.0
N E:ARG142 4.6 61.0 1.0
O E:PHE133 4.7 66.1 1.0
N E:GLN143 4.7 58.6 1.0
C E:CYS134 4.8 64.6 1.0
C E:PHE133 4.9 66.1 1.0
C E:CYS141 4.9 57.5 1.0

Zinc binding site 4 out of 12 in 6z0v

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Zinc binding site 4 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1001

b:86.9
occ:1.00
OE2 G:GLU129 1.8 66.5 1.0
NE2 G:HIS79 2.0 61.1 1.0
SG G:CYS141 2.4 58.7 1.0
SG G:CYS134 2.4 66.0 1.0
CB G:CYS134 2.4 66.0 1.0
CE1 G:HIS79 2.9 61.1 1.0
CD2 G:HIS79 3.0 61.1 1.0
CD G:GLU129 3.0 66.5 1.0
CB G:CYS141 3.4 58.7 1.0
CG2 G:VAL81 3.5 60.5 1.0
OE1 G:GLU129 3.6 66.5 1.0
CA G:CYS134 3.9 66.0 1.0
ND1 G:HIS79 4.0 61.1 1.0
CG G:HIS79 4.1 61.1 1.0
CB G:GLN143 4.2 58.9 1.0
CG G:GLU129 4.2 66.5 1.0
CA G:CYS141 4.3 58.7 1.0
CB G:VAL81 4.3 60.5 1.0
CG1 G:VAL81 4.4 60.5 1.0
CA G:VAL81 4.5 60.5 1.0
N G:ARG142 4.6 60.7 1.0
N G:CYS134 4.6 66.0 1.0
N G:GLN143 4.7 58.9 1.0
O G:PHE133 4.7 67.7 1.0
C G:CYS134 4.9 66.0 1.0
C G:PHE133 4.9 67.7 1.0
C G:CYS141 4.9 58.7 1.0

Zinc binding site 5 out of 12 in 6z0v

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Zinc binding site 5 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn1001

b:79.7
occ:1.00
OE2 I:GLU129 1.8 66.7 1.0
NE2 I:HIS79 2.0 58.5 1.0
SG I:CYS141 2.4 55.0 1.0
SG I:CYS134 2.4 64.1 1.0
CB I:CYS134 2.4 64.1 1.0
CE1 I:HIS79 2.9 58.5 1.0
CD2 I:HIS79 2.9 58.5 1.0
CD I:GLU129 3.0 66.7 1.0
CB I:CYS141 3.4 55.0 1.0
CG2 I:VAL81 3.4 58.4 1.0
OE1 I:GLU129 3.6 66.7 1.0
CA I:CYS134 3.9 64.1 1.0
ND1 I:HIS79 4.0 58.5 1.0
CG I:HIS79 4.1 58.5 1.0
CB I:GLN143 4.1 58.0 1.0
CG I:GLU129 4.1 66.7 1.0
CA I:CYS141 4.3 55.0 1.0
CB I:VAL81 4.3 58.4 1.0
CG1 I:VAL81 4.4 58.4 1.0
CA I:VAL81 4.5 58.4 1.0
N I:ARG142 4.6 59.4 1.0
N I:CYS134 4.6 64.1 1.0
N I:GLN143 4.7 58.0 1.0
O I:PHE133 4.7 66.3 1.0
C I:CYS134 4.9 64.1 1.0
C I:PHE133 4.9 66.3 1.0
C I:CYS141 4.9 55.0 1.0

Zinc binding site 6 out of 12 in 6z0v

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Zinc binding site 6 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn1001

b:78.2
occ:1.00
OE2 K:GLU129 1.8 67.6 1.0
NE2 K:HIS79 1.9 58.1 1.0
SG K:CYS141 2.4 57.4 1.0
CB K:CYS134 2.4 64.6 1.0
SG K:CYS134 2.4 64.6 1.0
CE1 K:HIS79 2.9 58.1 1.0
CD2 K:HIS79 3.0 58.1 1.0
CD K:GLU129 3.0 67.6 1.0
CB K:CYS141 3.4 57.4 1.0
CG2 K:VAL81 3.5 58.1 1.0
OE1 K:GLU129 3.6 67.6 1.0
CA K:CYS134 3.9 64.6 1.0
ND1 K:HIS79 4.0 58.1 1.0
CG K:HIS79 4.1 58.1 1.0
CB K:GLN143 4.1 58.7 1.0
CG K:GLU129 4.2 67.6 1.0
CA K:CYS141 4.3 57.4 1.0
CB K:VAL81 4.3 58.1 1.0
CG1 K:VAL81 4.4 58.1 1.0
CA K:VAL81 4.5 58.1 1.0
N K:CYS134 4.6 64.6 1.0
N K:ARG142 4.6 61.4 1.0
O K:PHE133 4.7 66.5 1.0
N K:GLN143 4.7 58.7 1.0
C K:CYS134 4.8 64.6 1.0
C K:PHE133 4.9 66.5 1.0
C K:CYS141 4.9 57.4 1.0

Zinc binding site 7 out of 12 in 6z0v

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Zinc binding site 7 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn1001

b:86.2
occ:1.00
OE2 M:GLU129 1.8 66.7 1.0
NE2 M:HIS79 2.0 61.3 1.0
SG M:CYS141 2.4 58.8 1.0
SG M:CYS134 2.4 66.1 1.0
CB M:CYS134 2.4 66.1 1.0
CE1 M:HIS79 2.9 61.3 1.0
CD2 M:HIS79 3.0 61.3 1.0
CD M:GLU129 3.0 66.7 1.0
CB M:CYS141 3.4 58.8 1.0
CG2 M:VAL81 3.5 60.4 1.0
OE1 M:GLU129 3.6 66.7 1.0
CA M:CYS134 3.9 66.1 1.0
ND1 M:HIS79 4.0 61.3 1.0
CG M:HIS79 4.1 61.3 1.0
CB M:GLN143 4.2 58.7 1.0
CG M:GLU129 4.2 66.7 1.0
CA M:CYS141 4.3 58.8 1.0
CB M:VAL81 4.3 60.4 1.0
CG1 M:VAL81 4.4 60.4 1.0
CA M:VAL81 4.5 60.4 1.0
N M:ARG142 4.6 60.6 1.0
N M:CYS134 4.6 66.1 1.0
N M:GLN143 4.7 58.7 1.0
O M:PHE133 4.7 67.8 1.0
C M:CYS134 4.9 66.1 1.0
C M:PHE133 4.9 67.8 1.0
C M:CYS141 4.9 58.8 1.0

Zinc binding site 8 out of 12 in 6z0v

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Zinc binding site 8 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Zn1001

b:80.3
occ:1.00
OE2 O:GLU129 1.8 67.3 1.0
NE2 O:HIS79 2.0 58.7 1.0
SG O:CYS141 2.4 55.0 1.0
SG O:CYS134 2.4 63.9 1.0
CB O:CYS134 2.4 63.9 1.0
CE1 O:HIS79 2.9 58.7 1.0
CD2 O:HIS79 2.9 58.7 1.0
CD O:GLU129 3.0 67.3 1.0
CB O:CYS141 3.4 55.0 1.0
CG2 O:VAL81 3.4 58.1 1.0
OE1 O:GLU129 3.6 67.3 1.0
CA O:CYS134 3.9 63.9 1.0
ND1 O:HIS79 4.0 58.7 1.0
CG O:HIS79 4.1 58.7 1.0
CB O:GLN143 4.1 58.2 1.0
CG O:GLU129 4.1 67.3 1.0
CA O:CYS141 4.3 55.0 1.0
CB O:VAL81 4.3 58.1 1.0
CG1 O:VAL81 4.4 58.1 1.0
CA O:VAL81 4.5 58.1 1.0
N O:ARG142 4.6 59.8 1.0
N O:CYS134 4.6 63.9 1.0
N O:GLN143 4.7 58.2 1.0
O O:PHE133 4.7 66.3 1.0
C O:CYS134 4.9 63.9 1.0
C O:PHE133 4.9 66.3 1.0
C O:CYS141 4.9 55.0 1.0

Zinc binding site 9 out of 12 in 6z0v

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Zinc binding site 9 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Zn1001

b:78.3
occ:1.00
OE2 Q:GLU129 1.8 67.6 1.0
NE2 Q:HIS79 1.9 58.1 1.0
SG Q:CYS141 2.4 56.9 1.0
CB Q:CYS134 2.4 64.9 1.0
SG Q:CYS134 2.4 64.9 1.0
CE1 Q:HIS79 2.9 58.1 1.0
CD2 Q:HIS79 3.0 58.1 1.0
CD Q:GLU129 3.0 67.6 1.0
CB Q:CYS141 3.4 56.9 1.0
CG2 Q:VAL81 3.5 57.7 1.0
OE1 Q:GLU129 3.6 67.6 1.0
CA Q:CYS134 3.9 64.9 1.0
ND1 Q:HIS79 4.0 58.1 1.0
CG Q:HIS79 4.1 58.1 1.0
CB Q:GLN143 4.1 58.5 1.0
CG Q:GLU129 4.2 67.6 1.0
CA Q:CYS141 4.3 56.9 1.0
CB Q:VAL81 4.3 57.7 1.0
CG1 Q:VAL81 4.4 57.7 1.0
CA Q:VAL81 4.5 57.7 1.0
N Q:CYS134 4.6 64.9 1.0
N Q:ARG142 4.6 60.8 1.0
O Q:PHE133 4.7 66.8 1.0
N Q:GLN143 4.7 58.5 1.0
C Q:CYS134 4.8 64.9 1.0
C Q:PHE133 4.9 66.8 1.0
C Q:CYS141 4.9 56.9 1.0

Zinc binding site 10 out of 12 in 6z0v

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Zinc binding site 10 out of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Cryoem Structure of the Chikungunya Virus NSP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn1001

b:86.4
occ:1.00
OE2 S:GLU129 1.8 66.8 1.0
NE2 S:HIS79 2.0 61.2 1.0
SG S:CYS141 2.4 58.8 1.0
SG S:CYS134 2.4 66.0 1.0
CB S:CYS134 2.4 66.0 1.0
CE1 S:HIS79 2.9 61.2 1.0
CD2 S:HIS79 3.0 61.2 1.0
CD S:GLU129 3.0 66.8 1.0
CB S:CYS141 3.4 58.8 1.0
CG2 S:VAL81 3.5 60.3 1.0
OE1 S:GLU129 3.6 66.8 1.0
CA S:CYS134 3.9 66.0 1.0
ND1 S:HIS79 4.0 61.2 1.0
CG S:HIS79 4.1 61.2 1.0
CB S:GLN143 4.2 58.9 1.0
CG S:GLU129 4.2 66.8 1.0
CA S:CYS141 4.3 58.8 1.0
CB S:VAL81 4.3 60.3 1.0
CG1 S:VAL81 4.4 60.3 1.0
CA S:VAL81 4.5 60.3 1.0
N S:ARG142 4.6 60.9 1.0
N S:CYS134 4.6 66.0 1.0
N S:GLN143 4.7 58.9 1.0
O S:PHE133 4.7 67.7 1.0
C S:CYS134 4.9 66.0 1.0
C S:PHE133 4.9 67.7 1.0
C S:CYS141 4.9 58.8 1.0

Reference:

R.Jones, G.Bragagnolo, R.Arranz, J.Reguera. Alphavirus NSP1 Capping Pores Gate Membranous Viral Replication Factories Nature 2020.
ISSN: ESSN 1476-4687
Page generated: Tue Oct 29 15:21:44 2024

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