Atomistry » Zinc » PDB 6yo4-6yzo » 6yyf
Atomistry »
  Zinc »
    PDB 6yo4-6yzo »
      6yyf »

Zinc in PDB 6yyf: Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C

Enzymatic activity of Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C

All present enzymatic activity of Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C, PDB code: 6yyf was solved by P.Brear, J.Wagstaff, M.Hyvonen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.74 / 1.93
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.9, 60.29, 57.4, 90, 98.93, 90
R / Rfree (%) 19 / 24.9

Other elements in 6yyf:

The structure of Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C (pdb code 6yyf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C, PDB code: 6yyf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6yyf

Go back to Zinc Binding Sites List in 6yyf
Zinc binding site 1 out of 2 in the Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:42.3
occ:1.00
ND1 A:HIS143 2.3 36.7 1.0
SG A:CYS165 2.5 44.3 1.0
SG A:CYS154 2.5 40.6 1.0
CE1 A:HIS143 2.6 39.6 1.0
SG A:CYS155 2.8 46.3 1.0
CB A:CYS165 3.1 45.7 1.0
CB A:CYS155 3.2 45.8 1.0
CG A:HIS143 3.4 37.7 1.0
CB A:CYS154 3.4 39.8 1.0
N A:CYS155 3.5 41.4 1.0
NE2 A:HIS143 3.8 35.6 1.0
N A:CYS165 3.8 43.9 1.0
CB A:TYR152 4.0 45.6 1.0
CA A:CYS155 4.0 47.3 1.0
C A:CYS154 4.0 43.0 1.0
CB A:HIS143 4.1 35.3 1.0
CA A:CYS165 4.1 43.5 1.0
CD2 A:HIS143 4.2 38.4 1.0
CA A:CYS154 4.2 42.6 1.0
CA A:HIS143 4.3 37.4 1.0
CG A:TYR152 4.3 44.1 1.0
CD A:PRO144 4.6 38.6 1.0
CD1 A:TYR152 4.7 43.0 1.0
N A:CYS154 4.7 40.3 1.0
O A:CYS154 4.9 47.2 1.0
CD2 A:TYR152 4.9 44.0 1.0
C A:GLY164 5.0 42.6 1.0

Zinc binding site 2 out of 2 in 6yyf

Go back to Zinc Binding Sites List in 6yyf
Zinc binding site 2 out of 2 in the Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of 5-Chloroindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:43.7
occ:1.00
ND1 B:HIS143 2.3 38.9 1.0
SG B:CYS155 2.5 44.5 1.0
SG B:CYS165 2.5 49.9 1.0
SG B:CYS154 2.5 41.5 1.0
CE1 B:HIS143 3.2 46.1 1.0
CG B:HIS143 3.2 43.1 1.0
CB B:CYS165 3.4 48.4 1.0
CB B:CYS155 3.4 45.8 1.0
CB B:HIS143 3.5 39.2 1.0
CB B:CYS154 3.5 44.6 1.0
N B:CYS155 3.6 50.0 1.0
CA B:HIS143 3.8 36.4 1.0
N B:CYS165 3.9 53.3 1.0
CB B:TYR152 4.1 40.4 1.0
CA B:CYS155 4.2 48.1 1.0
C B:CYS154 4.2 45.0 1.0
CA B:CYS165 4.2 52.8 1.0
CD B:PRO144 4.3 45.0 1.0
NE2 B:HIS143 4.3 44.0 1.0
CD2 B:HIS143 4.4 44.0 1.0
CA B:CYS154 4.4 43.4 1.0
CG B:TYR152 4.4 39.2 1.0
C B:HIS143 4.7 36.4 1.0
N B:HIS143 4.8 38.5 1.0
CD1 B:TYR152 4.8 37.9 1.0
N B:CYS154 4.9 42.8 1.0
O B:TYR142 4.9 38.2 1.0
N B:PRO144 4.9 39.2 1.0
CD2 B:TYR152 4.9 37.3 1.0
C B:GLY164 5.0 51.8 1.0

Reference:

P.Brear, G.Fischer, M.May, T.Pantelejevs, R.Mathieu, M.Rossmann, J.Wagstaff, B.Blaszczyk, M.Hyvonen. Optimising Crystallographic Systems For Structure-Guided Drug Discovery To Be Published.
Page generated: Tue Oct 29 15:17:02 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy