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Zinc in PDB 6wzu: The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group

Enzymatic activity of The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group

All present enzymatic activity of The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group:
3.4.19.12;

Protein crystallography data

The structure of The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group, PDB code: 6wzu was solved by J.Osipiuk, C.Tesar, M.Endres, R.Jedrzejczak, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.84 / 1.79
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.986, 81.986, 134.345, 90.00, 90.00, 120.00
R / Rfree (%) 16 / 17.4

Other elements in 6wzu:

The structure of The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group (pdb code 6wzu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group, PDB code: 6wzu:

Zinc binding site 1 out of 1 in 6wzu

Go back to Zinc Binding Sites List in 6wzu
Zinc binding site 1 out of 1 in the The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:41.0
occ:0.90
 SG A:CYS189 2.3 40.8 1.0
SG A:CYS226 2.3 42.8 1.0
SG A:CYS224 2.3 43.3 1.0
SG A:CYS192 2.4 49.8 1.0
CB A:CYS226 3.2 48.3 1.0
CB A:CYS224 3.3 42.0 1.0
CB A:CYS189 3.3 42.2 1.0
CB A:CYS192 3.4 49.2 1.0
N A:CYS192 3.9 48.9 1.0
N A:CYS226 4.1 47.2 1.0
CA A:CYS226 4.2 47.0 1.0
CA A:CYS192 4.2 48.9 1.0
CB A:THR191 4.3 48.6 1.0
O A:HOH818 4.6 45.0 1.0
CA A:CYS224 4.6 43.1 1.0
CA A:CYS189 4.7 42.3 1.0
CB A:LYS228 4.7 48.3 1.0
C A:THR191 4.8 48.5 1.0
CG2 A:THR191 4.9 50.4 1.0
C A:CYS224 4.9 46.1 1.0
CA A:THR191 4.9 47.5 1.0
C A:CYS226 4.9 46.0 1.0

Reference:

J.Osipiuk, C.Tesar, M.Endres, R.Jedrzejczak, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). The Crystal Structure of Papain-Like Protease of Sars Cov-2 , P3221 Space Group To Be Published.
Page generated: Tue Oct 29 10:28:23 2024

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