Zinc in PDB 6wn9: Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound

The structure of Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound, PDB code: 6wn9 was solved by C.J.Jones, D.Sychantha, P.L.Howell, A.J.Clarke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.16 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.510, 78.860, 106.590, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 19.2

The binding sites of Zinc atom in the Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound (pdb code 6wn9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound, PDB code: 6wn9:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:15.9 occ:0.76 O B:HOH929 1.9 16.1 1.0 OD1 A:ASP457 2.0 18.8 1.0 OD2 B:ASP575 2.0 16.6 1.0 ND1 A:HIS578 2.1 14.7 1.0 CG A:ASP457 2.7 17.1 1.0 OD2 A:ASP457 2.8 17.8 1.0 CE1 A:HIS578 3.0 17.9 1.0 CG B:ASP575 3.0 17.1 1.0 CG A:HIS578 3.2 14.5 1.0 O A:HOH958 3.5 19.4 1.0 CB A:HIS578 3.6 13.0 1.0 CB B:ASP575 3.7 16.1 1.0 CA A:HIS578 3.9 11.6 1.0 OD1 B:ASP575 3.9 17.2 1.0 O A:HOH827 4.1 17.5 1.0 NE2 A:HIS578 4.1 16.9 1.0 CB A:ASP457 4.2 17.1 1.0 CD2 A:HIS578 4.3 13.6 1.0 CB B:HIS578 4.3 16.5 1.0 N A:LEU579 4.5 13.4 1.0 O A:HOH986 4.6 32.7 1.0 O A:SER453 4.7 16.3 1.0 CA A:ASP457 4.7 15.4 1.0 C A:HIS578 4.7 15.2 1.0 N A:HIS578 5.0 14.6 1.0

Zinc binding site 2 out of 3 in the Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn701 b:20.3 occ:0.82 O A:HOH940 1.8 23.0 1.0 OD1 B:ASP457 2.0 20.0 1.0 OD2 A:ASP575 2.0 14.1 1.0 ND1 B:HIS578 2.1 18.1 1.0 CG B:ASP457 2.7 21.3 1.0 OD2 B:ASP457 2.8 20.0 1.0 CE1 B:HIS578 2.9 19.9 1.0 CG A:ASP575 3.1 14.6 1.0 CG B:HIS578 3.2 17.0 1.0 O A:HOH958 3.2 19.4 1.0 CB B:HIS578 3.6 16.5 1.0 CB A:ASP575 3.8 16.3 1.0 CA B:HIS578 3.9 14.7 1.0 OD1 A:ASP575 3.9 15.4 1.0 NE2 B:HIS578 4.1 16.1 1.0 CB B:ASP457 4.2 18.1 1.0 O B:HOH829 4.2 19.9 1.0 CD2 B:HIS578 4.2 15.9 1.0 CB A:HIS578 4.3 13.0 1.0 N B:LEU579 4.5 17.6 1.0 O B:SER453 4.6 18.2 1.0 O A:HOH986 4.7 32.7 1.0 CA B:ASP457 4.7 18.7 1.0 C B:HIS578 4.7 15.4 1.0

Zinc binding site 3 out of 3 in the Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain, Zn-Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn702 b:19.1 occ:0.77 ND1 B:HIS598 2.0 19.5 1.0 ND1 B:HIS557 2.1 18.4 1.0 O B:HOH938 2.3 12.6 1.0 CE1 B:HIS598 2.9 21.0 1.0 CG B:HIS598 3.0 17.0 1.0 CE1 B:HIS557 3.0 22.3 1.0 CG B:HIS557 3.1 17.9 1.0 CB B:HIS557 3.4 17.5 1.0 CB B:HIS598 3.4 17.2 1.0 CA B:HIS557 3.8 14.6 1.0 NE2 B:HIS598 4.1 18.8 1.0 CD2 B:HIS598 4.1 15.9 1.0 NE2 B:HIS557 4.2 21.3 1.0 CD2 B:HIS557 4.2 17.8 1.0 O B:VAL556 4.5 21.9 1.0 CA B:HIS598 4.5 19.9 1.0 N B:HIS557 4.7 17.4 1.0 O B:ALA599 4.7 27.9 1.0 N B:ALA599 4.8 22.6 1.0 C B:HIS557 4.9 16.6 1.0 C B:VAL556 4.9 20.7 1.0

C.S.Jones, D.Sychantha, P.L.Howell, A.J.Clarke. Structural Basis For the O-Acetyltransferase Function of the Extracytoplasmic Domain of Oata From Staphylococcus Aureus J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X