Zinc in PDB 6wjv: Structure of the Saccharomyces Cerevisiae Polymerase Epsilon Holoenzyme

All present enzymatic activity of Structure of the Saccharomyces Cerevisiae Polymerase Epsilon Holoenzyme:
2.7.7.7;

The binding sites of Zinc atom in the Structure of the Saccharomyces Cerevisiae Polymerase Epsilon Holoenzyme (pdb code 6wjv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Saccharomyces Cerevisiae Polymerase Epsilon Holoenzyme, PDB code: 6wjv:

Zinc binding site 1 out of 1 in the Structure of the Saccharomyces Cerevisiae Polymerase Epsilon Holoenzyme


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Saccharomyces Cerevisiae Polymerase Epsilon Holoenzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn3001 b:0.3 occ:1.00 SG A:CYS2111 2.5 60.0 1.0 CB A:CYS2130 2.7 48.5 1.0 SG A:CYS2133 2.8 61.5 1.0 SG A:CYS2130 2.8 48.5 1.0 SG A:CYS2108 3.3 56.6 1.0 N A:CYS2133 3.7 61.5 1.0 CB A:CYS2111 3.8 60.0 1.0 CB A:CYS2108 3.8 56.6 1.0 CB A:CYS2133 3.9 61.5 1.0 CA A:CYS2130 4.2 48.5 1.0 CB A:ARG2132 4.2 57.0 1.0 CA A:CYS2133 4.3 61.5 1.0 CB A:PHE2113 4.4 59.0 1.0 O A:CYS2133 4.5 61.5 1.0 N A:ARG2132 4.5 57.0 1.0 C A:CYS2133 4.6 61.5 1.0 C A:ARG2132 4.7 57.0 1.0 CA A:ARG2132 4.7 57.0 1.0 CA A:CYS2111 4.9 60.0 1.0 N A:VAL2131 4.9 50.5 1.0 C A:CYS2130 4.9 48.5 1.0 N A:CYS2111 5.0 60.0 1.0

Z.Yuan, R.Georgescu, G.D.Schauer, M.E.O'donnell, H.Li. Structure of the Polymerase Epsilon Holoenzyme and Atomic Model of the Leading Strand Replisome. Nat Commun V. 11 3156 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-16910-5