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Zinc in PDB 6wjj: Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor

Other elements in 6wjj:

The structure of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor also contains other interesting chemical elements:

Calcium (Ca) 16 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor (pdb code 6wjj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor, PDB code: 6wjj:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6wjj

Go back to Zinc Binding Sites List in 6wjj
Zinc binding site 1 out of 4 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn802

b:91.0
occ:1.00
 O L:TYR728 2.2 70.9 1.0
CD2 L:TYR728 2.5 70.9 1.0
CG L:TYR728 2.6 70.9 1.0
CD1 L:TYR728 2.7 70.9 1.0
CE2 L:TYR728 2.7 70.9 1.0
CZ L:TYR728 2.8 70.9 1.0
CE1 L:TYR728 2.8 70.9 1.0
C L:TYR728 3.0 70.9 1.0
CA L:TYR728 3.4 70.9 1.0
CB L:TYR728 3.5 70.9 1.0
OH L:TYR728 3.8 70.9 1.0
CB L:GLU735 4.0 66.2 1.0
N L:GLY729 4.1 67.7 1.0
CG L:GLU735 4.1 66.2 1.0
OE1 L:GLU735 4.1 66.2 1.0
OG1 L:THR731 4.2 68.8 1.0
CD L:GLU735 4.4 66.2 1.0
CA L:GLY729 4.5 67.7 1.0
CB L:THR731 4.8 68.8 1.0
N L:TYR728 4.8 70.9 1.0

Zinc binding site 2 out of 4 in 6wjj

Go back to Zinc Binding Sites List in 6wjj
Zinc binding site 2 out of 4 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn802

b:91.0
occ:1.00
 O I:TYR728 2.2 70.9 1.0
CD2 I:TYR728 2.5 70.9 1.0
CG I:TYR728 2.6 70.9 1.0
CD1 I:TYR728 2.7 70.9 1.0
CE2 I:TYR728 2.7 70.9 1.0
CZ I:TYR728 2.8 70.9 1.0
CE1 I:TYR728 2.8 70.9 1.0
C I:TYR728 3.0 70.9 1.0
CA I:TYR728 3.4 70.9 1.0
CB I:TYR728 3.5 70.9 1.0
OH I:TYR728 3.8 70.9 1.0
CB I:GLU735 4.0 66.2 1.0
N I:GLY729 4.1 67.7 1.0
CG I:GLU735 4.1 66.2 1.0
OE1 I:GLU735 4.1 66.2 1.0
OG1 I:THR731 4.2 68.8 1.0
CD I:GLU735 4.4 66.2 1.0
CA I:GLY729 4.5 67.7 1.0
CB I:THR731 4.8 68.8 1.0
N I:TYR728 4.8 70.9 1.0

Zinc binding site 3 out of 4 in 6wjj

Go back to Zinc Binding Sites List in 6wjj
Zinc binding site 3 out of 4 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn802

b:91.0
occ:1.00
 O J:TYR728 2.2 70.9 1.0
CD2 J:TYR728 2.5 70.9 1.0
CG J:TYR728 2.6 70.9 1.0
CD1 J:TYR728 2.7 70.9 1.0
CE2 J:TYR728 2.7 70.9 1.0
CZ J:TYR728 2.8 70.9 1.0
CE1 J:TYR728 2.8 70.9 1.0
C J:TYR728 3.0 70.9 1.0
CA J:TYR728 3.4 70.9 1.0
CB J:TYR728 3.5 70.9 1.0
OH J:TYR728 3.8 70.9 1.0
CB J:GLU735 4.0 66.2 1.0
N J:GLY729 4.1 67.7 1.0
CG J:GLU735 4.1 66.2 1.0
OE1 J:GLU735 4.1 66.2 1.0
OG1 J:THR731 4.2 68.8 1.0
CD J:GLU735 4.4 66.2 1.0
CA J:GLY729 4.5 67.7 1.0
CB J:THR731 4.8 68.8 1.0
N J:TYR728 4.8 70.9 1.0

Zinc binding site 4 out of 4 in 6wjj

Go back to Zinc Binding Sites List in 6wjj
Zinc binding site 4 out of 4 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn802

b:91.0
occ:1.00
 O K:TYR728 2.2 70.9 1.0
CD2 K:TYR728 2.5 70.9 1.0
CG K:TYR728 2.6 70.9 1.0
CD1 K:TYR728 2.7 70.9 1.0
CE2 K:TYR728 2.7 70.9 1.0
CZ K:TYR728 2.8 70.9 1.0
CE1 K:TYR728 2.8 70.9 1.0
C K:TYR728 3.0 70.9 1.0
CA K:TYR728 3.4 70.9 1.0
CB K:TYR728 3.5 70.9 1.0
OH K:TYR728 3.8 70.9 1.0
CB K:GLU735 4.0 66.2 1.0
N K:GLY729 4.1 67.7 1.0
CG K:GLU735 4.1 66.2 1.0
OE1 K:GLU735 4.1 66.2 1.0
OG1 K:THR731 4.2 68.8 1.0
CD K:GLU735 4.4 66.2 1.0
CA K:GLY729 4.5 67.7 1.0
CB K:THR731 4.8 68.8 1.0
N K:TYR728 4.8 70.9 1.0

Reference:

K.Zhou, S.Liu, N.J.Hardenbrook, Y.Cui, B.A.Krantz, Z.H.Zhou. Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors. Structure V. 28 879 2020.
ISSN: ISSN 0969-2126
PubMed: 32521227
DOI: 10.1016/J.STR.2020.05.009
Page generated: Tue Oct 29 10:09:20 2024

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