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Zinc in PDB 6ujd: Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.

Enzymatic activity of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.

All present enzymatic activity of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.:
6.1.1.16;

Protein crystallography data

The structure of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp., PDB code: 6ujd was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.46 / 2.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.260, 78.260, 208.900, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.7

Other elements in 6ujd:

The structure of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. (pdb code 6ujd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp., PDB code: 6ujd:

Zinc binding site 1 out of 1 in 6ujd

Go back to Zinc Binding Sites List in 6ujd
Zinc binding site 1 out of 1 in the Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:62.0
occ:0.81
 NE2 A:HIS250 2.1 67.8 1.0
SG A:CYS225 2.4 58.7 1.0
SG A:CYS29 2.4 57.5 1.0
CL A:CL504 2.6 97.5 1.0
CD2 A:HIS250 2.9 61.0 1.0
CE1 A:HIS250 3.2 59.9 1.0
CB A:CYS225 3.3 57.6 1.0
OE1 A:GLU254 3.4 64.8 1.0
CB A:CYS29 3.5 47.2 1.0
CG A:HIS250 4.2 62.1 1.0
CA A:CYS29 4.2 53.6 1.0
ND1 A:HIS250 4.2 62.0 1.0
CD A:GLU254 4.3 64.8 1.0
NE1 A:TRP221 4.4 62.3 1.0
OD1 A:ASN67 4.5 59.7 1.0
CE2 A:TYR27 4.6 57.4 1.0
OH A:TYR27 4.7 53.2 1.0
CA A:CYS225 4.8 53.3 1.0
OE2 A:GLU254 4.8 61.9 1.0
NE2 A:HIS251 4.8 57.4 1.0
CZ2 A:TRP221 4.8 55.0 1.0
CE2 A:TRP221 4.9 60.2 1.0
ND2 A:ASN67 4.9 54.9 1.0
CD2 A:HIS251 4.9 60.2 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. To Be Published.
Page generated: Tue Oct 29 08:38:18 2024

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