Zinc in PDB 6tas: Structure of the Two-Fold Capsomer of the DARC1 Capsid

The binding sites of Zinc atom in the Structure of the Two-Fold Capsomer of the DARC1 Capsid (pdb code 6tas). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Two-Fold Capsomer of the DARC1 Capsid, PDB code: 6tas:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Two-Fold Capsomer of the DARC1 Capsid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Two-Fold Capsomer of the DARC1 Capsid within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn301 b:93.9 occ:1.00 NE2 G:HIS235 2.1 96.5 1.0 SG G:CYS227 2.3 0.7 1.0 SG G:CYS230 2.3 0.7 1.0 SG G:CYS240 2.3 0.8 1.0 CD2 G:HIS235 3.0 87.4 1.0 CE1 G:HIS235 3.1 77.3 1.0 CB G:CYS227 3.3 1.0 1.0 CB G:CYS230 3.4 90.0 1.0 CB G:CYS240 3.5 0.1 1.0 CG G:HIS235 4.1 64.1 1.0 ND1 G:HIS235 4.1 57.9 1.0 N G:CYS230 4.2 72.3 1.0 CA G:CYS240 4.3 0.7 1.0 CA G:CYS230 4.3 83.4 1.0 CA G:CYS227 4.7 94.3 1.0 O G:PHE232 4.7 63.1 1.0 O G:THR236 4.8 0.4 1.0 O G:ASN239 4.9 96.2 1.0

Zinc binding site 2 out of 2 in the Structure of the Two-Fold Capsomer of the DARC1 Capsid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Two-Fold Capsomer of the DARC1 Capsid within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn301 b:93.9 occ:1.00 NE2 H:HIS235 2.0 96.5 1.0 SG H:CYS230 2.3 0.7 1.0 SG H:CYS240 2.3 0.8 1.0 SG H:CYS227 2.3 0.7 1.0 CE1 H:HIS235 2.8 77.3 1.0 CD2 H:HIS235 2.9 87.4 1.0 CB H:CYS227 3.2 1.0 1.0 CB H:CYS230 3.4 90.0 1.0 CB H:CYS240 3.5 0.1 1.0 ND1 H:HIS235 3.8 57.9 1.0 CG H:HIS235 3.9 64.1 1.0 N H:CYS230 4.2 72.3 1.0 CA H:CYS240 4.3 0.7 1.0 CA H:CYS230 4.3 83.4 1.0 CA H:CYS227 4.7 94.3 1.0 O H:THR236 4.8 0.4 1.0 O H:ASN239 4.9 96.2 1.0

S.Erlendsson, D.R.Morado, H.B.Cullen, C.Feschotte, J.D.Shepherd, J.A.G.Briggs. Structures of Virus-Like Capsids Formed By the Drosophila Neuronal Arc Proteins Nat.Neurosci. 2020.
ISSN: ISSN 1097-6256
DOI: 10.1038/S41593-019-0569-Y