Zinc in PDB 6rqt: Rna Polymerase I-Twh-RRN3-Dna

All present enzymatic activity of Rna Polymerase I-Twh-RRN3-Dna:
2.7.7.6;

The binding sites of Zinc atom in the Rna Polymerase I-Twh-RRN3-Dna (pdb code 6rqt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Rna Polymerase I-Twh-RRN3-Dna, PDB code: 6rqt:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Rna Polymerase I-Twh-RRN3-Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rna Polymerase I-Twh-RRN3-Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1701 b:0.6 occ:1.00 SG A:CYS105 2.4 0.7 1.0 SG A:CYS236 2.4 0.3 1.0 SG A:CYS102 2.5 0.2 1.0 SG A:CYS233 2.6 0.8 1.0 CB A:CYS102 2.8 0.2 1.0 CB A:CYS233 3.0 0.8 1.0 CB A:CYS105 3.5 0.7 1.0 O A:CYS236 3.9 0.3 1.0 N A:CYS105 4.0 0.7 1.0 CB A:CYS236 4.0 0.3 1.0 N A:CYS236 4.1 0.3 1.0 CA A:CYS102 4.3 0.2 1.0 CA A:CYS105 4.4 0.7 1.0 CA A:CYS233 4.5 0.8 1.0 CA A:CYS236 4.5 0.3 1.0 CB A:ASN235 4.5 1.0 1.0 C A:CYS236 4.7 0.3 1.0 CB A:PHE104 4.7 0.9 1.0 C A:ASN235 4.8 1.0 1.0 C A:CYS102 4.9 0.2 1.0 C A:PHE104 4.9 0.9 1.0

Zinc binding site 2 out of 6 in the Rna Polymerase I-Twh-RRN3-Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Rna Polymerase I-Twh-RRN3-Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1702 b:0.2 occ:1.00 OG1 A:THR64 2.1 0.2 1.0 NE2 A:HIS75 2.3 0.0 1.0 SG A:CYS62 2.5 0.5 1.0 CD2 A:HIS75 2.8 0.0 1.0 CB A:THR64 3.3 0.2 1.0 N A:CYS65 3.3 0.9 1.0 CB A:CYS65 3.4 0.9 1.0 CE1 A:HIS75 3.5 0.0 1.0 SG A:CYS65 3.7 0.9 1.0 SG A:CYS72 3.7 0.9 1.0 C A:THR64 3.8 0.2 1.0 CA A:CYS65 3.9 0.9 1.0 CA A:THR64 3.9 0.2 1.0 CB A:CYS62 4.1 0.5 1.0 CG A:HIS75 4.1 0.0 1.0 N A:THR64 4.3 0.2 1.0 ND1 A:HIS75 4.4 0.0 1.0 CG2 A:THR64 4.5 0.2 1.0 O A:THR64 4.6 0.2 1.0 CB A:CYS72 4.8 0.9 1.0 O A:GLY55 4.8 0.9 1.0 CD A:PRO73 4.9 0.8 1.0 CA A:GLY55 5.0 0.9 1.0 N A:GLY74 5.0 0.1 1.0

Zinc binding site 3 out of 6 in the Rna Polymerase I-Twh-RRN3-Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Rna Polymerase I-Twh-RRN3-Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1301 b:0.2 occ:1.00 SG B:CYS1131 2.5 0.4 1.0 SG B:CYS1104 2.5 0.3 1.0 SG B:CYS1107 2.5 96.2 1.0 SG B:CYS1128 2.6 0.1 1.0 CB B:CYS1131 3.2 0.4 1.0 N B:CYS1131 3.2 0.4 1.0 CB B:CYS1104 3.3 0.3 1.0 CB B:CYS1107 3.6 96.2 1.0 CB B:CYS1128 3.7 0.1 1.0 CA B:CYS1131 3.8 0.4 1.0 CB B:ARG1130 3.8 0.1 1.0 C B:ARG1130 4.1 0.1 1.0 N B:ARG1130 4.2 0.1 1.0 CA B:ARG1130 4.3 0.1 1.0 N B:CYS1107 4.5 96.2 1.0 CA B:CYS1107 4.7 96.2 1.0 CA B:CYS1104 4.7 0.3 1.0 CG B:ARG1130 4.8 0.1 1.0 CD B:ARG1130 5.0 0.1 1.0

Zinc binding site 4 out of 6 in the Rna Polymerase I-Twh-RRN3-Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Rna Polymerase I-Twh-RRN3-Dna within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn201 b:0.6 occ:1.00 SG I:CYS33 2.5 0.4 1.0 CB I:CYS30 2.5 0.2 1.0 CB I:CYS13 2.5 0.0 1.0 CB I:ALA35 2.5 0.5 1.0 O I:CYS33 3.0 0.4 1.0 SG I:CYS13 3.1 0.0 1.0 SG I:CYS30 3.2 0.2 1.0 CA I:ALA35 3.6 0.5 1.0 CA I:CYS13 3.7 0.0 1.0 C I:CYS33 3.8 0.4 1.0 O I:ALA35 3.8 0.5 1.0 N I:ALA35 3.8 0.5 1.0 CB I:CYS33 3.9 0.4 1.0 CA I:CYS30 3.9 0.2 1.0 N I:CYS13 4.0 0.0 1.0 C I:ALA35 4.1 0.5 1.0 CA I:CYS33 4.2 0.4 1.0 N I:CYS30 4.3 0.2 1.0 N I:CYS33 4.3 0.4 1.0 N I:LYS34 4.8 1.0 1.0 C I:LYS34 4.9 1.0 1.0 C I:CYS30 4.9 0.2 1.0 C I:CYS13 5.0 0.0 1.0

Zinc binding site 5 out of 6 in the Rna Polymerase I-Twh-RRN3-Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Rna Polymerase I-Twh-RRN3-Dna within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn101 b:0.0 occ:1.00 N J:CYS46 2.2 91.8 1.0 SG J:CYS10 2.4 86.1 1.0 SG J:CYS46 2.5 91.8 1.0 CB J:CYS46 2.9 91.8 1.0 C J:CYS45 2.9 0.8 1.0 CA J:CYS46 2.9 91.8 1.0 CB J:ARG43 3.1 99.9 1.0 N J:CYS45 3.3 0.8 1.0 CB J:CYS10 3.5 86.1 1.0 CA J:CYS45 3.5 0.8 1.0 NE J:ARG43 3.6 99.9 1.0 CB J:CYS45 3.8 0.8 1.0 O J:CYS45 3.8 0.8 1.0 C J:ARG43 4.0 99.9 1.0 N J:TYR44 4.0 93.6 1.0 CA J:ARG43 4.1 99.9 1.0 CD J:ARG43 4.1 99.9 1.0 CG J:ARG43 4.1 99.9 1.0 C J:TYR44 4.2 93.6 1.0 C J:CYS46 4.3 91.8 1.0 CZ J:ARG43 4.5 99.9 1.0 O J:ARG43 4.5 99.9 1.0 CA J:TYR44 4.6 93.6 1.0 N J:ARG43 4.6 99.9 1.0 N J:ARG47 4.6 86.6 1.0 CA J:CYS10 4.7 86.1 1.0 NH2 J:ARG43 4.7 99.9 1.0

Zinc binding site 6 out of 6 in the Rna Polymerase I-Twh-RRN3-Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Rna Polymerase I-Twh-RRN3-Dna within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:0.5 occ:1.00 OD1 L:ASP50 2.2 0.9 1.0 SG L:CYS48 2.5 0.8 1.0 SG L:CYS34 2.5 0.3 1.0 CG L:ASP50 3.0 0.9 1.0 OD2 L:ASP50 3.2 0.9 1.0 CG L:GLU33 3.3 0.8 1.0 CB L:GLU33 3.3 0.8 1.0 CB L:CYS34 3.7 0.3 1.0 N L:CYS34 3.8 0.3 1.0 SG L:CYS51 3.8 0.0 1.0 OG L:SER36 3.8 0.2 1.0 CB L:CYS48 3.8 0.8 1.0 CB L:SER36 4.1 0.2 1.0 CA L:CYS34 4.3 0.3 1.0 C L:GLU33 4.4 0.8 1.0 CB L:ASP50 4.4 0.9 1.0 CA L:GLU33 4.4 0.8 1.0 N L:ASP50 4.5 0.9 1.0 N L:CYS51 4.6 0.0 1.0 CD L:GLU33 4.8 0.8 1.0 SG L:CYS31 4.8 0.5 1.0 CA L:ASP50 4.9 0.9 1.0 C L:CYS34 5.0 0.3 1.0

C.W.Mueller, Y.Sadian, L.Tafur. Rna Polymerase I-Twh-RRN3-Dna To Be Published.