Atomistry » Zinc » PDB 6r06-6r54 » 6r46
Atomistry »
  Zinc »
    PDB 6r06-6r54 »
      6r46 »

Zinc in PDB 6r46: Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution

Enzymatic activity of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution

All present enzymatic activity of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution:
1.3.1.33;

Protein crystallography data

The structure of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution, PDB code: 6r46 was solved by A.Zhou, L.Feng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.00 / 2.50
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 134.950, 134.950, 104.750, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 24.9

Other elements in 6r46:

The structure of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution (pdb code 6r46). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution, PDB code: 6r46:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 1 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:47.2
occ:0.50
 ND1 A:HIS58 1.9 52.2 1.0
CG A:HIS58 2.7 53.6 1.0
CL A:CL409 2.8 0.0 0.5
CB A:HIS58 2.9 53.3 1.0
CE1 A:HIS58 3.0 52.5 1.0
CL A:CL408 3.7 75.0 1.0
CD2 A:HIS58 3.8 52.9 1.0
NE2 A:HIS58 3.9 51.6 1.0
CA A:HIS58 4.4 54.4 1.0
CD1 A:LEU37 4.7 69.4 1.0
C A:HIS58 4.9 54.2 1.0
O A:HIS58 5.0 55.9 1.0

Zinc binding site 2 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 2 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:0.7
occ:1.00
 ND1 A:HIS113 2.9 43.3 1.0
ND2 A:ASN197 3.3 50.1 1.0
OG1 A:THR200 3.5 47.0 1.0
O A:HIS113 3.6 43.1 1.0
CB A:THR200 3.7 47.5 1.0
CE1 A:HIS113 3.7 45.3 1.0
CG2 A:THR200 3.7 44.8 1.0
CA A:ASN197 3.9 50.4 1.0
CA A:HIS113 3.9 42.0 1.0
CG A:HIS113 4.0 45.4 1.0
O A:CYS196 4.1 48.9 1.0
CB A:HIS116 4.2 45.8 1.0
C A:HIS113 4.2 42.7 1.0
N A:PHE117 4.2 46.8 1.0
O A:ASN112 4.3 42.6 1.0
CG A:ASN197 4.3 54.9 1.0
N A:ASN197 4.4 47.5 1.0
CB A:HIS113 4.4 43.1 1.0
C A:CYS196 4.5 47.8 1.0
CB A:ASN197 4.5 53.2 1.0
CA A:PHE117 4.7 50.2 1.0
CD1 A:ILE120 4.7 54.8 1.0
C A:HIS116 4.7 46.6 1.0
CB A:PHE117 4.7 51.2 1.0
O A:ASN197 4.8 53.0 1.0
C A:ASN197 4.9 53.0 1.0
NE2 A:HIS113 4.9 46.7 1.0
N A:HIS113 5.0 41.7 1.0

Zinc binding site 3 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 3 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:80.8
occ:1.00
 NE2 A:HIS209 2.2 79.2 1.0
CL A:CL407 3.0 0.8 0.5
CD2 A:HIS209 3.1 76.7 1.0
CE1 A:HIS209 3.3 74.6 1.0
CG A:HIS209 4.3 76.4 1.0
ND1 A:HIS209 4.3 74.4 1.0
NE2 A:GLN273 4.4 83.2 1.0
CB A:SER274 4.9 68.7 1.0

Zinc binding site 4 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 4 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn405

b:1.0
occ:1.00
 OE1 A:GLU210 3.3 74.0 1.0
CD A:GLU210 4.5 79.3 1.0
CL A:CL407 4.8 0.8 0.5

Zinc binding site 5 out of 5 in 6r46

Go back to Zinc Binding Sites List in 6r46
Zinc binding site 5 out of 5 in the Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Lpor (Thermosynechococcus Elongatus) Complexed with Nadp+ at 2.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn406

b:83.9
occ:0.50
 OE1 A:GLU302 3.4 56.0 1.0
CD A:GLU302 3.6 58.7 1.0
NH1 A:ARG306 3.6 76.8 1.0
OE2 A:GLU302 3.7 57.0 1.0
CD A:ARG206 4.1 69.1 1.0
CG A:GLU302 4.5 59.7 1.0
CG A:ARG206 4.7 67.3 1.0
CZ A:ARG306 4.9 75.4 1.0

Reference:

A.Zhou, L.Feng. A Nadph Binding Protein To Be Published.
Page generated: Tue Oct 29 05:57:20 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy