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Zinc in PDB 6r0b: T. Cruzi Fpps in Complex with 3-((4-(5-Chlorobenzo[D]Thiazol-2-Yl) Piperazin-1-Yl)Methyl)-1H-Indol-5-Ol

Protein crystallography data

The structure of T. Cruzi Fpps in Complex with 3-((4-(5-Chlorobenzo[D]Thiazol-2-Yl) Piperazin-1-Yl)Methyl)-1H-Indol-5-Ol, PDB code: 6r0b was solved by J.K.Petrick, L.Muenzker, C.Schleberger, W.Jahnke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.31 / 1.61
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 58.094, 58.094, 396.952, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 23

Other elements in 6r0b:

The structure of T. Cruzi Fpps in Complex with 3-((4-(5-Chlorobenzo[D]Thiazol-2-Yl) Piperazin-1-Yl)Methyl)-1H-Indol-5-Ol also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the T. Cruzi Fpps in Complex with 3-((4-(5-Chlorobenzo[D]Thiazol-2-Yl) Piperazin-1-Yl)Methyl)-1H-Indol-5-Ol (pdb code 6r0b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the T. Cruzi Fpps in Complex with 3-((4-(5-Chlorobenzo[D]Thiazol-2-Yl) Piperazin-1-Yl)Methyl)-1H-Indol-5-Ol, PDB code: 6r0b:

Zinc binding site 1 out of 1 in 6r0b

Go back to Zinc Binding Sites List in 6r0b
Zinc binding site 1 out of 1 in the T. Cruzi Fpps in Complex with 3-((4-(5-Chlorobenzo[D]Thiazol-2-Yl) Piperazin-1-Yl)Methyl)-1H-Indol-5-Ol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of T. Cruzi Fpps in Complex with 3-((4-(5-Chlorobenzo[D]Thiazol-2-Yl) Piperazin-1-Yl)Methyl)-1H-Indol-5-Ol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:32.2
occ:0.28
OD2 A:ASP102 1.9 44.7 1.0
O A:HOH513 2.0 48.9 0.8
CG A:ASP102 2.7 41.3 1.0
OD1 A:ASP102 2.8 41.3 1.0
OE1 A:GLN167 3.6 51.1 1.0
NE2 A:GLN167 3.8 36.9 1.0
OD2 A:ASP170 3.9 41.5 1.0
CD A:GLN167 4.1 54.2 1.0
CB A:ASP98 4.2 24.4 1.0
CB A:ASP102 4.2 29.0 1.0
O A:ASP98 4.5 23.9 1.0
NZ A:LYS273 4.5 43.8 1.0
O A:HOH527 4.5 40.9 1.0
CG A:ASP98 4.6 38.9 1.0
CG1 A:VAL171 4.7 32.3 1.0
CA A:ASP98 4.8 22.9 1.0
OD2 A:ASP98 4.9 39.9 1.0
C A:ASP98 5.0 25.4 1.0

Reference:

J.K.Petrick, J.Wolfgang. T. Cruzi Fpps in Complex with 3-((4-(5-Chlorobenzo[D]Thiazol-2-Yl)Piperazin-1-Yl)Methyl) -1H-Indol-5-Ol To Be Published.
Page generated: Tue Oct 29 05:49:35 2024

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