Atomistry » Zinc » PDB 6qeb-6r05 » 6qu1
Atomistry »
  Zinc »
    PDB 6qeb-6r05 »
      6qu1 »

Zinc in PDB 6qu1: Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution.

Enzymatic activity of Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution.

All present enzymatic activity of Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution.:
2.3.2.27; 3.6.4.12;

Protein crystallography data

The structure of Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution., PDB code: 6qu1 was solved by J.A.Newman, H.Aitkenhead, A.Gavard, M.Lim, H.L.Williams, J.Q.Svejstrup, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.43 / 3.70
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 64.496, 64.496, 287.986, 90.00, 90.00, 90.00
R / Rfree (%) 30 / 34.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution. (pdb code 6qu1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution., PDB code: 6qu1:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6qu1

Go back to Zinc Binding Sites List in 6qu1
Zinc binding site 1 out of 4 in the Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:0.5
occ:1.00
 SG A:CYS68 2.3 0.3 1.0
SG A:CYS65 2.4 0.7 1.0
SG A:CYS91 2.4 0.9 1.0
CB A:CYS65 3.0 0.1 1.0
N A:GLY66 3.5 0.1 1.0
SG A:CYS88 3.5 1.0 1.0
N A:CYS68 3.7 0.3 1.0
CB A:CYS68 3.7 0.3 1.0
N A:ARG69 4.0 0.0 1.0
CA A:CYS68 4.1 0.6 1.0
N A:VAL67 4.2 0.2 1.0
CB A:CYS91 4.2 0.8 1.0
CA A:CYS65 4.2 0.9 1.0
C A:CYS65 4.3 0.1 1.0
CA A:GLY66 4.3 83.3 1.0
C A:CYS68 4.4 0.7 1.0
N A:GLU70 4.4 0.8 1.0
C A:GLY66 4.4 0.1 1.0
N A:CYS88 4.7 0.2 1.0
C A:VAL67 4.8 0.8 1.0
CB A:GLU70 4.8 0.0 1.0
CA A:ARG69 4.9 0.6 1.0
CB A:CYS88 4.9 0.8 1.0
CA A:VAL67 5.0 1.0 1.0

Zinc binding site 2 out of 4 in 6qu1

Go back to Zinc Binding Sites List in 6qu1
Zinc binding site 2 out of 4 in the Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:90.3
occ:1.00
 ND1 A:HIS85 2.2 93.3 1.0
SG A:CYS83 2.4 95.2 1.0
SG A:CYS117 2.4 97.6 1.0
SG A:CYS120 2.6 0.7 1.0
CE1 A:HIS85 2.7 90.0 1.0
CB A:CYS120 2.7 0.0 1.0
CB A:CYS83 3.0 0.2 1.0
N A:CYS120 3.2 0.6 1.0
CG A:HIS85 3.4 0.1 1.0
CB A:CYS117 3.4 0.5 1.0
CA A:CYS120 3.5 0.6 1.0
NE2 A:HIS85 3.8 95.2 1.0
CB A:HIS85 4.1 98.6 1.0
CD2 A:HIS85 4.2 0.1 1.0
CB A:VAL119 4.4 0.9 1.0
C A:VAL119 4.4 0.3 1.0
CA A:CYS83 4.4 96.0 1.0
C A:CYS120 4.5 0.2 1.0
O A:CYS83 4.7 0.1 1.0
N A:VAL119 4.7 0.5 1.0
C A:CYS83 4.7 92.4 1.0
CA A:VAL119 4.7 0.7 1.0
N A:LYS121 4.8 0.9 1.0
CA A:CYS117 4.8 0.8 1.0
N A:HIS85 5.0 0.9 1.0

Zinc binding site 3 out of 4 in 6qu1

Go back to Zinc Binding Sites List in 6qu1
Zinc binding site 3 out of 4 in the Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1003

b:0.8
occ:1.00
 ND1 A:HIS212 2.2 0.0 1.0
SG A:CYS229 2.4 0.3 1.0
SG A:CYS232 2.5 0.8 1.0
SG A:CYS209 2.8 0.2 1.0
CE1 A:HIS212 2.9 0.4 1.0
CB A:CYS232 3.1 0.0 1.0
N A:CYS232 3.3 0.3 1.0
CG A:HIS212 3.3 0.0 1.0
CA A:CYS232 3.6 0.0 1.0
CB A:CYS229 3.9 0.5 1.0
CB A:HIS212 3.9 0.9 1.0
CB A:CYS209 4.0 0.1 1.0
NE2 A:HIS212 4.1 0.2 1.0
N A:CYS229 4.1 0.2 1.0
CB A:ASP231 4.3 0.2 1.0
C A:ASP231 4.3 0.8 1.0
CD2 A:HIS212 4.3 0.7 1.0
N A:HIS212 4.4 0.5 1.0
CA A:CYS229 4.4 1.0 1.0
O A:CYS229 4.6 0.2 1.0
CA A:ASP231 4.7 0.6 1.0
C A:CYS229 4.7 0.5 1.0
N A:ASP231 4.7 0.0 1.0
CB A:VAL211 4.8 0.3 1.0
CA A:HIS212 4.8 0.4 1.0

Zinc binding site 4 out of 4 in 6qu1

Go back to Zinc Binding Sites List in 6qu1
Zinc binding site 4 out of 4 in the Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the KAP1 Rbcc Domain in Complex with the SMARCAD1 CUE1 Domain at 3.7 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1004

b:0.8
occ:1.00
 ND1 A:HIS240 2.2 0.8 1.0
ND1 A:HIS237 2.4 0.1 1.0
SG A:CYS221 2.5 81.8 1.0
SG A:CYS224 3.0 0.8 1.0
CG A:HIS240 3.1 1.0 1.0
CE1 A:HIS240 3.2 0.1 1.0
CB A:HIS240 3.3 0.4 1.0
CG A:HIS237 3.3 0.5 1.0
CE1 A:HIS237 3.4 0.6 1.0
CB A:SER223 3.4 0.1 1.0
CB A:HIS237 3.6 0.6 1.0
C A:SER223 4.0 0.2 1.0
CB A:CYS224 4.1 0.4 1.0
CA A:SER223 4.2 0.5 1.0
N A:CYS224 4.2 82.4 1.0
CB A:CYS221 4.2 0.7 1.0
CD2 A:HIS240 4.3 0.1 1.0
O A:SER223 4.3 0.6 1.0
NE2 A:HIS240 4.3 0.6 1.0
OG A:SER223 4.3 0.8 1.0
N A:SER223 4.5 79.3 1.0
NE2 A:HIS237 4.5 0.7 1.0
CA A:HIS237 4.5 0.2 1.0
CD2 A:HIS237 4.5 0.5 1.0
CA A:CYS224 4.7 0.5 1.0
CA A:HIS240 4.8 0.7 1.0
OE1 A:GLN233 4.9 0.3 1.0
NE2 A:GLN233 4.9 0.3 1.0

Reference:

M.Lim, J.A.Newman, H.L.Williams, L.Masino, H.Aitkenhead, A.E.Gravard, O.Gileadi, J.Q.Svejstrup. A Ubiquitin-Binding Domain That Binds A Structural Fold Distinct From That of Ubiquitin. Structure 2019.
ISSN: ISSN 0969-2126
PubMed: 31204252
DOI: 10.1016/J.STR.2019.05.003
Page generated: Tue Oct 29 05:46:15 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy