Atomistry » Zinc » PDB 6oe0-6oq5 » 6ome
Atomistry »
  Zinc »
    PDB 6oe0-6oq5 »
      6ome »

Zinc in PDB 6ome: Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx

Enzymatic activity of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx

All present enzymatic activity of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx:
3.4.11.1; 3.4.11.10;

Protein crystallography data

The structure of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 6ome was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.16 / 1.95
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 137.960, 137.960, 128.140, 90.00, 90.00, 120.00
R / Rfree (%) 14.3 / 17.1

Other elements in 6ome:

The structure of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx (pdb code 6ome). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 6ome:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6ome

Go back to Zinc Binding Sites List in 6ome
Zinc binding site 1 out of 2 in the Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn506

b:22.3
occ:1.00
 OE2 A:GLU347 1.9 19.8 1.0
OD2 A:ASP286 1.9 21.8 1.0
O A:HOH727 2.0 20.3 1.0
NZ A:LYS263 2.1 19.2 1.0
OD2 A:ASP268 2.3 19.6 1.0
CG A:ASP286 2.8 23.7 1.0
CD A:GLU347 2.9 20.1 1.0
CE A:LYS263 2.9 18.6 1.0
OD1 A:ASP286 3.1 21.4 1.0
ZN A:ZN507 3.1 37.3 1.0
OE1 A:GLU347 3.2 21.1 1.0
CG A:ASP268 3.3 20.0 1.0
O1 A:CO3501 3.6 25.5 1.0
O A:HOH862 3.8 55.6 1.0
CB A:ASP268 3.9 18.8 1.0
OD1 A:ASP268 4.2 21.6 1.0
CB A:ASP286 4.2 20.1 1.0
CG A:GLU347 4.3 19.4 1.0
O A:THR373 4.4 22.9 1.0
CB A:VAL265 4.4 21.4 1.0
CD A:LYS263 4.4 19.7 1.0
CG2 A:VAL265 4.5 19.1 1.0
CG1 A:VAL265 4.5 18.3 1.0
N A:GLY348 4.5 19.9 1.0
O A:HOH669 4.7 36.6 1.0
CA A:GLY348 4.8 18.7 1.0
C A:CO3501 4.9 20.4 1.0
O A:ASP345 4.9 22.3 1.0

Zinc binding site 2 out of 2 in 6ome

Go back to Zinc Binding Sites List in 6ome
Zinc binding site 2 out of 2 in the Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn507

b:37.3
occ:1.00
 OE1 A:GLU347 2.2 21.1 1.0
OD2 A:ASP268 2.2 19.6 1.0
OD1 A:ASP345 2.3 21.0 1.0
O A:HOH727 2.3 20.3 1.0
O A:ASP345 2.4 22.3 1.0
CG A:ASP268 3.0 20.0 1.0
ZN A:ZN506 3.1 22.3 1.0
CD A:GLU347 3.1 20.1 1.0
OD1 A:ASP268 3.1 21.6 1.0
C A:ASP345 3.2 24.2 1.0
CG A:ASP345 3.3 24.5 1.0
O A:HOH862 3.3 55.6 1.0
OE2 A:GLU347 3.3 19.8 1.0
CA A:ASP345 3.5 22.0 1.0
CB A:ASP345 4.0 21.3 1.0
NZ A:LYS275 4.0 24.8 1.0
OD2 A:ASP345 4.2 24.3 1.0
O1 A:CO3501 4.2 25.5 1.0
CE A:LYS275 4.2 22.4 1.0
N A:ALA346 4.3 22.3 1.0
N A:GLU347 4.4 20.3 1.0
ND2 A:ASN318 4.4 18.8 1.0
CB A:ASP268 4.4 18.8 1.0
CG A:GLU347 4.5 19.4 1.0
OD2 A:ASP286 4.6 21.8 1.0
C1 A:EDO505 4.7 58.0 1.0
NZ A:LYS263 4.7 19.2 1.0
CA A:ALA346 4.8 18.4 1.0
CA A:GLY270 4.8 19.2 1.0
N A:ASP345 4.9 18.6 1.0
CB A:GLU347 4.9 18.3 1.0
O A:THR344 4.9 20.6 1.0
C A:CO3501 4.9 20.4 1.0

Reference:

T.E.Edwards, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx To Be Published.
Page generated: Thu Aug 21 18:08:43 2025

Last articles

Zn in 9UUO
Zn in 9UUS
Zn in 9W4R
Zn in 9VKW
Zn in 9W4S
Zn in 9VH1
Zn in 9RMX
Zn in 9RMU
Zn in 9QWN
Zn in 9U9Y
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy