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Zinc in PDB 6ome: Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx

Enzymatic activity of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx

All present enzymatic activity of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx:
3.4.11.1; 3.4.11.10;

Protein crystallography data

The structure of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 6ome was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.16 / 1.95
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 137.960, 137.960, 128.140, 90.00, 90.00, 120.00
R / Rfree (%) 14.3 / 17.1

Other elements in 6ome:

The structure of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx (pdb code 6ome). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 6ome:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6ome

Go back to Zinc Binding Sites List in 6ome
Zinc binding site 1 out of 2 in the Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn506

b:22.3
occ:1.00
 OE2 A:GLU347 1.9 19.8 1.0
OD2 A:ASP286 1.9 21.8 1.0
O A:HOH727 2.0 20.3 1.0
NZ A:LYS263 2.1 19.2 1.0
OD2 A:ASP268 2.3 19.6 1.0
CG A:ASP286 2.8 23.7 1.0
CD A:GLU347 2.9 20.1 1.0
CE A:LYS263 2.9 18.6 1.0
OD1 A:ASP286 3.1 21.4 1.0
ZN A:ZN507 3.1 37.3 1.0
OE1 A:GLU347 3.2 21.1 1.0
CG A:ASP268 3.3 20.0 1.0
O1 A:CO3501 3.6 25.5 1.0
O A:HOH862 3.8 55.6 1.0
CB A:ASP268 3.9 18.8 1.0
OD1 A:ASP268 4.2 21.6 1.0
CB A:ASP286 4.2 20.1 1.0
CG A:GLU347 4.3 19.4 1.0
O A:THR373 4.4 22.9 1.0
CB A:VAL265 4.4 21.4 1.0
CD A:LYS263 4.4 19.7 1.0
CG2 A:VAL265 4.5 19.1 1.0
CG1 A:VAL265 4.5 18.3 1.0
N A:GLY348 4.5 19.9 1.0
O A:HOH669 4.7 36.6 1.0
CA A:GLY348 4.8 18.7 1.0
C A:CO3501 4.9 20.4 1.0
O A:ASP345 4.9 22.3 1.0

Zinc binding site 2 out of 2 in 6ome

Go back to Zinc Binding Sites List in 6ome
Zinc binding site 2 out of 2 in the Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn507

b:37.3
occ:1.00
 OE1 A:GLU347 2.2 21.1 1.0
OD2 A:ASP268 2.2 19.6 1.0
OD1 A:ASP345 2.3 21.0 1.0
O A:HOH727 2.3 20.3 1.0
O A:ASP345 2.4 22.3 1.0
CG A:ASP268 3.0 20.0 1.0
ZN A:ZN506 3.1 22.3 1.0
CD A:GLU347 3.1 20.1 1.0
OD1 A:ASP268 3.1 21.6 1.0
C A:ASP345 3.2 24.2 1.0
CG A:ASP345 3.3 24.5 1.0
O A:HOH862 3.3 55.6 1.0
OE2 A:GLU347 3.3 19.8 1.0
CA A:ASP345 3.5 22.0 1.0
CB A:ASP345 4.0 21.3 1.0
NZ A:LYS275 4.0 24.8 1.0
OD2 A:ASP345 4.2 24.3 1.0
O1 A:CO3501 4.2 25.5 1.0
CE A:LYS275 4.2 22.4 1.0
N A:ALA346 4.3 22.3 1.0
N A:GLU347 4.4 20.3 1.0
ND2 A:ASN318 4.4 18.8 1.0
CB A:ASP268 4.4 18.8 1.0
CG A:GLU347 4.5 19.4 1.0
OD2 A:ASP286 4.6 21.8 1.0
C1 A:EDO505 4.7 58.0 1.0
NZ A:LYS263 4.7 19.2 1.0
CA A:ALA346 4.8 18.4 1.0
CA A:GLY270 4.8 19.2 1.0
N A:ASP345 4.9 18.6 1.0
CB A:GLU347 4.9 18.3 1.0
O A:THR344 4.9 20.6 1.0
C A:CO3501 4.9 20.4 1.0

Reference:

T.E.Edwards, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Probable Cytosol Aminopeptidase (Leucine Aminopeptidase, Lap) From Chlamydia Trachomatis D/Uw-3/Cx To Be Published.
Page generated: Tue Oct 29 04:26:56 2024

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