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Zinc in PDB 6mcd: Crystal Structure of Tris-Thiolate Pb(II) Complex with Adjacent Water in A De Novo Three Stranded Coiled Coil Peptide

Protein crystallography data

The structure of Crystal Structure of Tris-Thiolate Pb(II) Complex with Adjacent Water in A De Novo Three Stranded Coiled Coil Peptide, PDB code: 6mcd was solved by A.E.Tolbert, L.Ruckthong, J.A.Stuckey, V.L.Pecoraro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.05 / 1.50
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 38.304, 38.304, 141.141, 90.00, 90.00, 120.00
R / Rfree (%) 20.6 / 20.6

Other elements in 6mcd:

The structure of Crystal Structure of Tris-Thiolate Pb(II) Complex with Adjacent Water in A De Novo Three Stranded Coiled Coil Peptide also contains other interesting chemical elements:

Lead (Pb) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Tris-Thiolate Pb(II) Complex with Adjacent Water in A De Novo Three Stranded Coiled Coil Peptide (pdb code 6mcd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Tris-Thiolate Pb(II) Complex with Adjacent Water in A De Novo Three Stranded Coiled Coil Peptide, PDB code: 6mcd:

Zinc binding site 1 out of 1 in 6mcd

Go back to Zinc Binding Sites List in 6mcd
Zinc binding site 1 out of 1 in the Crystal Structure of Tris-Thiolate Pb(II) Complex with Adjacent Water in A De Novo Three Stranded Coiled Coil Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Tris-Thiolate Pb(II) Complex with Adjacent Water in A De Novo Three Stranded Coiled Coil Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:23.9
occ:1.00
OE1 A:GLU34 1.9 27.0 1.0
NE2 A:HIS35 2.0 24.2 1.0
OE1 A:GLU31 2.0 23.6 1.0
CD A:GLU31 2.9 23.4 1.0
CD2 A:HIS35 2.9 23.4 1.0
CD A:GLU34 3.0 27.5 1.0
CE1 A:HIS35 3.0 25.2 1.0
OE2 A:GLU31 3.2 25.1 1.0
CG A:GLU34 3.6 31.1 1.0
OE2 A:GLU34 4.1 29.7 1.0
CG A:HIS35 4.1 23.9 1.0
ND1 A:HIS35 4.1 25.4 1.0
CB A:GLU34 4.1 24.9 1.0
CG A:GLU31 4.3 21.7 1.0
CB A:GLU31 4.7 20.9 1.0
CA A:GLU31 4.8 20.3 1.0

Reference:

A.E.Tolbert, C.S.Ervin, T.J.Paul, L.Ruckthong, K.Neupane, J.A.Stuckey, R.Prabhakar, V.L.Pecoraro. Heteromeric 3-Stranded Coiled Coils Designed Using A Pb(II)(Cys)3 Template Mediated Strategy To Be Published.
Page generated: Tue Oct 29 03:03:16 2024

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