Zinc in PDB 6l5t: The Crystal Structure of Sads-Cov Papain Like Protease

The structure of The Crystal Structure of Sads-Cov Papain Like Protease, PDB code: 6l5t was solved by C.P.Fan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.26 / 1.72
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.231, 68.511, 104.350, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21.2

The binding sites of Zinc atom in the The Crystal Structure of Sads-Cov Papain Like Protease (pdb code 6l5t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of Sads-Cov Papain Like Protease, PDB code: 6l5t:

Zinc binding site 1 out of 1 in the The Crystal Structure of Sads-Cov Papain Like Protease


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Sads-Cov Papain Like Protease within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:19.5 occ:1.00 ND1 A:HIS211 2.0 19.8 1.0 SG A:CYS183 2.3 19.8 1.0 SG A:CYS209 2.3 19.5 1.0 SG A:CYS180 2.3 20.1 1.0 CE1 A:HIS211 3.0 19.6 1.0 CG A:HIS211 3.1 20.3 1.0 CB A:CYS209 3.2 18.5 1.0 CB A:CYS180 3.3 20.9 1.0 CB A:CYS183 3.3 18.9 1.0 CB A:HIS211 3.4 21.6 1.0 N A:CYS183 3.8 20.8 1.0 NE2 A:HIS211 4.1 21.7 1.0 N A:HIS211 4.1 20.1 1.0 CD2 A:HIS211 4.2 23.7 1.0 CA A:CYS183 4.2 19.8 1.0 CA A:HIS211 4.4 20.7 1.0 CD A:PRO210 4.4 20.2 1.0 CB A:ARG182 4.5 20.3 1.0 CA A:CYS209 4.6 20.2 1.0 CD1 A:PHE213 4.6 21.1 1.0 N A:PRO210 4.6 20.8 1.0 CA A:CYS180 4.7 22.2 1.0 C A:ARG182 4.7 23.9 1.0 C A:CYS209 4.8 20.5 1.0 O A:HOH552 4.8 25.6 1.0 CG A:PRO210 4.9 19.4 1.0 N A:ARG182 5.0 20.6 1.0 CA A:ARG182 5.0 20.2 1.0

L.Wang, W.Hu, C.P.Fan. Structural and Biochemical Characterization of Sads-Cov Papain Like Protease 2. Protein Sci. 2020.
ISSN: ESSN 1469-896X
PubMed: 32216114
DOI: 10.1002/PRO.3857