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Zinc in PDB 6k0b: Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna

Enzymatic activity of Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna

All present enzymatic activity of Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna:
3.1.26.5;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna (pdb code 6k0b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna, PDB code: 6k0b:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6k0b

Go back to Zinc Binding Sites List in 6k0b
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn201

b:0.5
occ:1.00
SG G:CYS92 2.5 0.1 1.0
SG G:CYS95 2.6 0.7 1.0
SG G:CYS66 2.6 0.5 1.0
N G:CYS95 2.8 0.7 1.0
CB G:CYS95 3.0 0.7 1.0
CB G:GLU94 3.2 0.1 1.0
CA G:CYS95 3.4 0.7 1.0
CB G:CYS66 3.5 0.5 1.0
C G:GLU94 3.7 0.1 1.0
CA G:GLU94 3.9 0.1 1.0
CB G:CYS92 4.0 0.1 1.0
N G:GLU94 4.2 0.1 1.0
CG G:GLU94 4.3 0.1 1.0
OG1 G:THR68 4.4 0.8 1.0
N G:GLY96 4.4 0.2 1.0
C G:CYS95 4.5 0.7 1.0
SG G:CYS63 4.7 0.1 1.0
CB G:THR68 4.7 0.8 1.0
O G:GLU94 4.7 0.1 1.0
CA G:CYS66 4.8 0.5 1.0

Zinc binding site 2 out of 2 in 6k0b

Go back to Zinc Binding Sites List in 6k0b
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Archaeal Ribonuclease P with Mature Trna within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn201

b:0.3
occ:1.00
SG H:CYS92 2.5 0.5 1.0
SG H:CYS95 2.6 0.8 1.0
SG H:CYS66 2.6 0.0 1.0
N H:CYS95 2.8 0.8 1.0
CB H:CYS95 3.0 0.8 1.0
CB H:GLU94 3.2 0.4 1.0
CA H:CYS95 3.4 0.8 1.0
CB H:CYS66 3.5 0.0 1.0
C H:GLU94 3.7 0.4 1.0
CA H:GLU94 3.9 0.4 1.0
CB H:CYS92 4.0 0.5 1.0
N H:GLU94 4.2 0.4 1.0
CG H:GLU94 4.3 0.4 1.0
OG1 H:THR68 4.4 0.9 1.0
N H:GLY96 4.4 1.0 1.0
C H:CYS95 4.5 0.8 1.0
SG H:CYS63 4.7 0.8 1.0
CB H:THR68 4.7 0.9 1.0
O H:GLU94 4.7 0.4 1.0
CA H:CYS66 4.8 0.0 1.0

Reference:

F.Wan, Q.Wang, J.Tan, M.Tan, J.Chen, S.Shi, P.Lan, J.Wu, M.Lei. Cryo-Electron Microscopy Structure of An Archaeal Ribonuclease P Holoenzyme. Nat Commun V. 10 2617 2019.
ISSN: ESSN 2041-1723
PubMed: 31197137
DOI: 10.1038/S41467-019-10496-3
Page generated: Tue Oct 29 01:29:14 2024

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