Zinc in PDB 6jzb: Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family

The structure of Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family, PDB code: 6jzb was solved by M.Zhu, Z.L.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.83 / 2.75
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.584, 104.242, 234.622, 90.00, 90.00, 90.00
R / Rfree (%)	24.9 / 28.3

The binding sites of Zinc atom in the Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family (pdb code 6jzb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family, PDB code: 6jzb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.9 occ:1.00 SG A:CYS151 2.1 97.0 1.0 SG A:CYS208 2.2 0.7 1.0 SG A:CYS205 2.3 0.9 1.0 SG A:CYS148 2.5 0.6 1.0 CB A:CYS148 2.9 0.8 1.0 CB A:CYS151 2.9 0.1 1.0 CB A:CYS205 2.9 0.1 1.0 CB A:CYS208 3.2 0.1 1.0 OG1 A:THR150 3.8 0.5 1.0 N A:CYS151 3.8 0.9 1.0 CA A:CYS151 4.0 0.9 1.0 N A:CYS208 4.0 0.3 1.0 OG1 A:THR207 4.1 0.1 1.0 CA A:CYS208 4.2 0.9 1.0 CA A:CYS205 4.4 0.1 1.0 CA A:CYS148 4.4 0.1 1.0 CA A:GLY155 4.5 0.0 1.0 O A:SER154 4.6 0.7 1.0 C A:THR150 4.7 0.1 1.0 C A:CYS205 4.8 0.3 1.0 CB A:THR150 4.9 0.9 1.0 C A:CYS151 4.9 0.4 1.0

Zinc binding site 2 out of 2 in the Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:0.8 occ:1.00 SG A:CYS168 2.2 0.5 1.0 SG A:CYS165 2.2 0.2 1.0 SG A:CYS191 2.2 0.8 1.0 SG A:CYS194 2.7 0.3 1.0 CB A:CYS168 2.8 0.9 1.0 CB A:CYS191 3.1 0.3 1.0 CB A:CYS165 3.1 0.0 1.0 N A:CYS168 3.4 0.8 1.0 CB A:CYS194 3.4 0.5 1.0 N A:CYS194 3.6 0.6 1.0 CG2 A:VAL193 3.6 0.4 1.0 CA A:CYS168 3.7 0.8 1.0 CA A:CYS194 4.1 0.6 1.0 CA A:GLY172 4.4 0.3 1.0 CB A:ARG167 4.5 1.0 1.0 N A:GLY172 4.5 0.4 1.0 CA A:CYS191 4.5 0.4 1.0 CA A:CYS165 4.5 0.4 1.0 C A:ARG167 4.5 0.6 1.0 C A:VAL193 4.7 0.6 1.0 C A:CYS168 4.7 0.5 1.0 N A:VAL193 4.7 0.7 1.0 C A:GLY172 4.7 0.4 1.0 CB A:VAL193 4.7 0.4 1.0 N A:ARG167 4.8 0.8 1.0 N A:HIS195 4.8 0.1 1.0 CA A:ARG167 4.9 0.8 1.0 CA A:VAL193 4.9 0.8 1.0 O A:ARG197 4.9 0.1 1.0 C A:CYS194 4.9 0.5 1.0 O A:GLY172 5.0 0.2 1.0 C A:CYS165 5.0 0.6 1.0

M.Zhu, Z.L.Zhu. Structural Characterization of Dnaj From Streptococcus Pneumonia Presents A New Tetramer of HSP40 Family To Be Published.