Zinc in PDB 6h0y: Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022, PDB code: 6h0y was solved by P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.97 / 1.21
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.554, 71.554, 150.737, 90.00, 90.00, 90.00
R / Rfree (%)	12.4 / 15.8

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022 also contains other interesting chemical elements:

Nickel	(Ni)	1 atom
Sodium	(Na)	1 atom

The binding sites of Zinc atom in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022 (pdb code 6h0y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022, PDB code: 6h0y:

Zinc binding site 1 out of 1 in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:18.9 occ:1.00 NE2 A:HIS244 2.0 16.8 1.0 SG A:CYS310 2.3 21.4 1.0 SG A:CYS238 2.3 20.1 1.0 SG A:CYS312 2.3 21.2 1.0 CE1 A:HIS244 3.0 16.3 1.0 CD2 A:HIS244 3.1 15.6 1.0 CB A:CYS238 3.1 20.9 1.0 CB A:CYS312 3.3 23.6 1.0 CB A:CYS310 3.4 22.3 1.0 N A:CYS312 3.9 25.2 1.0 CA A:CYS312 4.1 24.8 1.0 CA A:CYS310 4.1 22.4 1.0 ND1 A:HIS244 4.1 16.0 1.0 O A:HOH557 4.2 35.2 1.0 CG A:HIS244 4.2 14.8 1.0 CB A:GLU314 4.3 44.1 1.0 N A:GLU314 4.4 40.1 1.0 CA A:CYS238 4.5 21.9 1.0 O A:HOH833 4.6 36.0 1.0 N A:SER311 4.6 26.0 1.0 C A:CYS310 4.6 24.7 1.0 C A:CYS312 4.7 27.7 1.0 N A:GLY313 4.7 30.8 1.0 O A:ALA240 4.7 16.4 1.0 N A:ALA315 4.8 45.4 1.0 CA A:PHE241 4.8 14.7 1.0 CA A:GLU314 4.9 42.7 1.0 C A:ALA240 4.9 16.6 1.0 CG A:GLU314 5.0 46.0 1.0

P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link. Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS022 To Be Published.