Zinc in PDB 6gyu: Cryo-Em Structure of the CBF3-Msk Complex of the Budding Yeast Kinetochore

The binding sites of Zinc atom in the Cryo-Em Structure of the CBF3-Msk Complex of the Budding Yeast Kinetochore (pdb code 6gyu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of the CBF3-Msk Complex of the Budding Yeast Kinetochore, PDB code: 6gyu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of the CBF3-Msk Complex of the Budding Yeast Kinetochore


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the CBF3-Msk Complex of the Budding Yeast Kinetochore within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn701 b:0.8 occ:1.00 SG B:CYS30 2.5 0.3 1.0 SG B:CYS17 2.5 0.7 1.0 SG B:CYS24 2.5 0.0 1.0 SG B:CYS14 2.5 0.5 1.0 CB B:CYS17 3.3 0.7 1.0 ZN B:ZN702 3.4 0.7 1.0 CB B:CYS24 3.5 0.0 1.0 CB B:CYS14 3.7 0.5 1.0 CA B:CYS24 3.8 0.0 1.0 CB B:CYS30 4.1 0.3 1.0 N B:CYS14 4.1 0.5 1.0 SG B:CYS33 4.4 0.0 1.0 N B:CYS17 4.4 0.7 1.0 N B:ASP25 4.4 0.8 1.0 CA B:CYS14 4.5 0.5 1.0 CA B:CYS17 4.5 0.7 1.0 C B:CYS24 4.5 0.0 1.0 O B:ASP25 4.8 0.8 1.0 O B:LYS23 5.0 0.6 1.0 CB B:ASN32 5.0 0.1 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of the CBF3-Msk Complex of the Budding Yeast Kinetochore


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the CBF3-Msk Complex of the Budding Yeast Kinetochore within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn702 b:0.7 occ:1.00 SG B:CYS30 2.5 0.3 1.0 SG B:CYS42 2.5 0.1 1.0 SG B:CYS33 2.5 0.0 1.0 SG B:CYS14 2.5 0.5 1.0 CB B:CYS14 3.3 0.5 1.0 CB B:CYS33 3.3 0.0 1.0 CB B:CYS30 3.4 0.3 1.0 ZN B:ZN701 3.4 0.8 1.0 CB B:CYS42 3.6 0.1 1.0 O B:PRO29 3.6 0.4 1.0 C B:PRO29 4.3 0.4 1.0 CB B:VAL16 4.5 0.1 1.0 CA B:CYS30 4.6 0.3 1.0 CA B:CYS33 4.6 0.0 1.0 N B:CYS30 4.7 0.3 1.0 N B:CYS33 4.7 0.0 1.0 SG B:CYS17 4.7 0.7 1.0 CA B:CYS14 4.8 0.5 1.0 CG2 B:VAL16 4.8 0.1 1.0 CA B:CYS42 4.9 0.1 1.0

K.Yan, Z.Zhang, J.Yang, S.H.Mclaughlin, D.Barford. Architecture of the CBF3-Centromere Complex of the Budding Yeast Kinetochore. Nat. Struct. Mol. Biol. V. 25 1103 2018.
ISSN: ESSN 1545-9985
PubMed: 30478265
DOI: 10.1038/S41594-018-0154-1