Zinc in PDB 6gdd: Dihydroorotase From Aquifex Aeolicus Under 1200 Bar of Hydrostatic Pressure

All present enzymatic activity of Dihydroorotase From Aquifex Aeolicus Under 1200 Bar of Hydrostatic Pressure:
3.5.2.3;

The structure of Dihydroorotase From Aquifex Aeolicus Under 1200 Bar of Hydrostatic Pressure, PDB code: 6gdd was solved by T.Prange, E.Girard, G.Herve, D.R.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.30 / 2.60
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	90.651, 176.148, 65.676, 90.00, 90.00, 90.00
R / Rfree (%)	15.1 / n/a

The binding sites of Zinc atom in the Dihydroorotase From Aquifex Aeolicus Under 1200 Bar of Hydrostatic Pressure (pdb code 6gdd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Dihydroorotase From Aquifex Aeolicus Under 1200 Bar of Hydrostatic Pressure, PDB code: 6gdd:

Zinc binding site 1 out of 1 in the Dihydroorotase From Aquifex Aeolicus Under 1200 Bar of Hydrostatic Pressure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dihydroorotase From Aquifex Aeolicus Under 1200 Bar of Hydrostatic Pressure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:67.0 occ:1.00 NE2 A:HIS63 2.1 54.0 1.0 NE2 A:HIS61 2.3 39.8 1.0 SG A:CYS181 2.4 95.0 1.0 OD2 A:ASP153 2.5 62.2 1.0 OD1 A:ASP305 2.8 51.1 1.0 CE1 A:HIS63 3.1 49.4 1.0 OD1 A:ASP153 3.1 92.6 1.0 CD2 A:HIS63 3.1 44.1 1.0 CG A:ASP153 3.2 78.6 1.0 CE1 A:HIS61 3.2 42.2 1.0 CD2 A:HIS61 3.3 39.1 1.0 CB A:CYS181 3.5 95.0 1.0 CG A:ASP305 3.7 52.1 1.0 OD2 A:ASP305 4.1 63.7 1.0 ND1 A:HIS63 4.2 46.9 1.0 CG A:HIS63 4.2 41.7 1.0 CG A:MET93 4.3 39.2 1.0 ND1 A:HIS61 4.3 36.7 1.0 CG A:HIS61 4.4 38.6 1.0 CB A:ASP153 4.7 80.7 1.0 CB A:ASP183 4.7 95.0 1.0 SD A:MET93 4.8 39.7 1.0 CB A:ASP305 4.9 50.5 1.0 CA A:CYS181 4.9 92.9 1.0 CG A:ASP183 5.0 95.0 1.0

T.Prange, E.Girard, R.Fourme, A.C.Dhaussy, B.Edwards, A.Vaishnav, C.Patel, H.Guy-Evans, G.Herve, D.R.Evans. Pressure-Induced Activation of Latent Dihydroorotase From Aquifex Aeolicus As Revealed By High Pressure Protein Crystallography. Febs J. V. 286 1204 2019.
ISSN: ISSN 1742-464X
PubMed: 30657257
DOI: 10.1111/FEBS.14758