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Zinc in PDB 6ein: Crystal Structure of KDM5B in Complex with S49365A.

Protein crystallography data

The structure of Crystal Structure of KDM5B in Complex with S49365A., PDB code: 6ein was solved by V.Srikannathasan, J.A.Newman, A.Szykowska, M.Wright, G.F.Ruda, S.A.Vazquez-Rodriguez, K.Kupinska, C.Strain-Damerell, N.A.Burgess-Brown, C.H.Arrowsmith, A.Edwards, C.Bountra, U.Oppermann, K.Huber, F.Vondelft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.91 / 2.11
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.470, 143.470, 153.470, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 22.5

Other elements in 6ein:

The structure of Crystal Structure of KDM5B in Complex with S49365A. also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of KDM5B in Complex with S49365A. (pdb code 6ein). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of KDM5B in Complex with S49365A., PDB code: 6ein:

Zinc binding site 1 out of 1 in 6ein

Go back to Zinc Binding Sites List in 6ein
Zinc binding site 1 out of 1 in the Crystal Structure of KDM5B in Complex with S49365A.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of KDM5B in Complex with S49365A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn802

b:35.7
occ:1.00
ND1 A:HIS718 2.1 39.6 1.0
SG A:CYS715 2.3 35.2 1.0
SG A:CYS695 2.3 35.5 1.0
SG A:CYS692 2.4 33.5 1.0
CE1 A:HIS718 2.9 41.0 1.0
CB A:CYS692 3.2 29.5 1.0
CG A:HIS718 3.3 44.3 1.0
CB A:CYS695 3.4 33.2 1.0
CB A:CYS715 3.5 31.6 1.0
CB A:HIS718 3.7 34.6 1.0
N A:CYS695 3.8 37.1 1.0
N A:CYS715 3.9 28.0 1.0
NE2 A:HIS718 4.1 47.4 1.0
CA A:CYS695 4.2 31.9 1.0
CA A:CYS715 4.2 33.0 1.0
CD2 A:HIS718 4.3 41.8 1.0
CG2 A:THR697 4.4 35.6 1.0
CB A:LYS694 4.6 43.2 1.0
CA A:CYS692 4.6 30.0 1.0
N A:HIS718 4.7 41.2 1.0
CD A:ARG619 4.7 41.9 1.0
C A:CYS715 4.7 33.0 1.0
O A:CYS715 4.8 32.8 1.0
CA A:HIS718 4.9 39.2 1.0
C A:LYS694 4.9 45.0 1.0
C A:CYS695 4.9 38.2 1.0
CB A:HIS717 4.9 36.7 1.0

Reference:

V.Srikannathasan, V.Srikannathasan, J.A.Newman, A.Szykowska, M.Wright, G.F.Ruda, S.A.Vazquez-Rodriguez, K.Kupinska, C.Strain-Damerell, N.A.Burgess-Brown, C.H.Arrowsmith, A.Edwards, C.Bountra, U.Oppermann, K.Huber, F.Vondelft. N/A N/A.
Page generated: Mon Oct 28 20:09:57 2024

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