Zinc in PDB 6dmy: Cryo-Em Structure of Human PTCH1 and Shhn Complex

The structure of Cryo-Em Structure of Human PTCH1 and Shhn Complex also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Human PTCH1 and Shhn Complex (pdb code 6dmy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Human PTCH1 and Shhn Complex, PDB code: 6dmy:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Human PTCH1 and Shhn Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Human PTCH1 and Shhn Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:7.8 occ:1.00 OD2 B:ASP147 2.1 9.6 1.0 NE2 B:HIS140 2.2 4.7 1.0 OD1 B:ASP147 2.3 5.2 1.0 CG B:ASP147 2.5 9.4 1.0 ND1 B:HIS182 2.9 6.6 1.0 CD2 B:HIS140 3.1 7.9 1.0 CE1 B:HIS140 3.1 8.6 1.0 CE1 B:HIS182 3.5 8.4 1.0 OE1 B:GLU176 3.5 15.5 1.0 CB B:ASP147 4.0 5.2 1.0 NE2 B:HIS180 4.2 12.9 1.0 CG B:HIS182 4.2 6.6 1.0 ND1 B:HIS140 4.2 6.9 1.0 CG B:HIS140 4.2 5.0 1.0 CD B:GLU176 4.4 18.4 1.0 CD2 B:HIS180 4.5 12.4 1.0 OE2 B:GLU176 4.6 24.6 1.0 CB B:HIS182 4.7 6.7 1.0 OE1 B:GLU126 4.7 19.7 1.0 NE2 B:HIS182 4.8 9.1 1.0 CA B:ASP147 4.9 5.1 1.0 N B:ASP147 5.0 5.0 1.0

X.Gong, H.Qian, P.Cao, X.Zhao, Q.Zhou, J.Lei, N.Yan. Structural Basis For the Recognition of Sonic Hedgehog By Human PATCHED1. Science V. 361 2018.
ISSN: ESSN 1095-9203
PubMed: 29954986
DOI: 10.1126/SCIENCE.AAS8935