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Zinc in PDB 6c9c: Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803

Enzymatic activity of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803

All present enzymatic activity of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803:
3.5.1.108;

Protein crystallography data

The structure of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803, PDB code: 6c9c was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.64 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.660, 79.340, 50.920, 90.00, 92.01, 90.00
R / Rfree (%) 16.2 / 21.3

Other elements in 6c9c:

The structure of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803 (pdb code 6c9c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803, PDB code: 6c9c:

Zinc binding site 1 out of 1 in 6c9c

Go back to Zinc Binding Sites List in 6c9c
Zinc binding site 1 out of 1 in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Racemic Ligand PT803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:17.5
occ:1.00
 NE2 A:HIS78 2.0 14.6 1.0
NE2 A:HIS237 2.0 13.9 1.0
OD2 A:ASP241 2.1 18.2 1.0
O25 A:F64402 2.2 18.3 0.5
O27 A:F64402 2.2 18.1 0.5
O27 A:EU1401 2.3 23.7 0.5
O25 A:EU1401 2.4 21.1 0.5
OD1 A:ASP241 2.7 14.4 1.0
CG A:ASP241 2.7 20.2 1.0
C24 A:F64402 2.8 20.5 0.5
N26 A:F64402 2.9 21.5 0.5
CE1 A:HIS237 3.0 13.9 1.0
CD2 A:HIS78 3.0 14.4 1.0
N26 A:EU1401 3.0 22.8 0.5
C24 A:EU1401 3.0 20.2 0.5
CE1 A:HIS78 3.0 16.9 1.0
CD2 A:HIS237 3.1 19.8 1.0
OG1 A:THR190 3.9 20.2 1.0
ND1 A:HIS237 4.1 15.6 1.0
CB A:THR190 4.1 20.3 1.0
ND1 A:HIS78 4.1 20.4 1.0
CG A:HIS78 4.1 19.4 1.0
CG A:HIS237 4.2 17.6 1.0
CB A:ASP241 4.2 15.5 1.0
C22 A:F64402 4.3 21.1 0.5
CG A:GLU77 4.3 17.9 1.0
OE2 A:GLU77 4.3 22.4 1.0
C22 A:EU1401 4.4 22.2 0.5
C23 A:F64402 4.7 23.9 0.5
CE1 A:HIS264 4.7 19.0 1.0
CA A:THR190 4.8 17.9 1.0
NE2 A:HIS264 4.8 19.9 1.0
C21 A:EU1401 4.8 18.6 0.5
CA A:ASP241 4.8 14.0 1.0
CD A:GLU77 4.8 23.1 1.0
O A:HIS237 4.9 15.9 1.0
O30 A:EU1401 4.9 23.6 0.5
C29 A:EU1401 5.0 21.2 0.5

Reference:

S.L.Delker, S.J.Mayclin, J.N.Phan, J.Abendroth, D.Lorimer, T.E.Edwards. Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT803 To Be Published.
Page generated: Mon Oct 28 18:35:43 2024

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