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Zinc in PDB 6c49: Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii

Enzymatic activity of Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii

All present enzymatic activity of Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii:
1.1.1.1;

Protein crystallography data

The structure of Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii, PDB code: 6c49 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.79 / 1.85
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 63.440, 89.570, 133.490, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii (pdb code 6c49). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii, PDB code: 6c49:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6c49

Go back to Zinc Binding Sites List in 6c49
Zinc binding site 1 out of 2 in the Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:17.8
occ:1.00
SG A:CYS96 2.3 15.8 1.0
SG A:CYS99 2.3 16.0 1.0
SG A:CYS110 2.3 15.5 1.0
SG A:CYS102 2.4 14.8 1.0
CB A:CYS110 3.2 17.0 1.0
CB A:CYS102 3.4 13.6 1.0
CB A:CYS96 3.4 20.4 1.0
CB A:CYS99 3.4 17.2 1.0
N A:CYS96 3.6 16.8 1.0
CA A:CYS110 3.7 16.5 1.0
N A:CYS99 3.8 16.7 1.0
CA A:CYS96 3.9 19.0 1.0
N A:GLN97 3.9 14.7 1.0
N A:GLY112 4.0 17.4 1.0
N A:THR111 4.1 17.1 1.0
CA A:CYS99 4.2 17.1 1.0
C A:CYS96 4.2 21.3 1.0
C A:CYS110 4.3 16.2 1.0
N A:CYS102 4.3 14.8 1.0
CA A:CYS102 4.4 14.0 1.0
N A:ALA98 4.4 18.5 1.0
CA A:GLY112 4.5 22.7 1.0
CB A:SER95 4.7 16.9 1.0
C A:SER95 4.7 19.7 1.0
CA A:GLN97 4.9 16.0 1.0
C A:CYS99 4.9 17.2 1.0
C A:ALA98 5.0 21.7 1.0
O A:HOH770 5.0 33.2 1.0
N A:CYS110 5.0 16.4 1.0
C A:GLN97 5.0 21.3 1.0
O A:CYS99 5.0 16.8 1.0

Zinc binding site 2 out of 2 in 6c49

Go back to Zinc Binding Sites List in 6c49
Zinc binding site 2 out of 2 in the Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:20.0
occ:0.53
OE2 A:GLU66 2.1 37.6 1.0
SG A:CYS43 2.2 32.9 1.0
O A:HOH501 2.2 31.9 1.0
SG A:CYS153 2.3 41.4 1.0
NE2 A:HIS65 2.4 31.7 1.0
CB A:CYS153 3.1 31.1 1.0
CD A:GLU66 3.1 26.8 1.0
CB A:CYS43 3.1 24.7 1.0
CE1 A:HIS65 3.2 27.4 1.0
CD2 A:HIS65 3.4 23.3 1.0
CG A:GLU66 3.6 22.8 1.0
NH2 A:ARG333 3.7 29.8 1.0
O A:HOH760 4.1 30.2 1.0
OE1 A:GLU66 4.2 25.7 1.0
ND1 A:HIS65 4.3 25.0 1.0
CA A:CYS43 4.3 22.8 1.0
O A:HOH532 4.4 19.7 1.0
CG A:HIS65 4.4 20.8 1.0
N A:CYS43 4.5 22.5 1.0
CA A:CYS153 4.6 25.4 1.0
O A:HOH716 4.7 40.4 1.0
CB A:SER45 4.7 27.6 1.0
OG A:SER45 4.7 35.4 1.0
OD2 A:ASP46 4.9 21.4 1.0
N A:GLY154 4.9 26.3 1.0
CZ A:ARG333 4.9 38.7 1.0
C A:CYS43 5.0 25.7 1.0

Reference:

D.M.Dranow, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Alcohol Dehydrogenase From Acinetobacter Baumannii To Be Published.
Page generated: Mon Oct 28 18:28:52 2024

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