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Zinc in PDB 6c0d: Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum

Enzymatic activity of Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum

All present enzymatic activity of Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum:
3.5.1.87;

Protein crystallography data

The structure of Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum, PDB code: 6c0d was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.72 / 1.80
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 136.620, 136.620, 67.510, 90.00, 90.00, 120.00
R / Rfree (%) 15.7 / 17.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum (pdb code 6c0d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum, PDB code: 6c0d:

Zinc binding site 1 out of 1 in 6c0d

Go back to Zinc Binding Sites List in 6c0d
Zinc binding site 1 out of 1 in the Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:27.0
occ:0.70
 NE2 A:HIS81 2.1 26.2 1.0
O A:HOH910 2.1 35.2 1.0
NE2 A:HIS188 2.2 26.8 1.0
OD1 A:ASP92 2.2 34.9 1.0
O A:HOH678 2.3 28.6 1.0
CE1 A:HIS81 3.0 27.2 1.0
CE1 A:HIS188 3.0 28.6 1.0
CD2 A:HIS81 3.1 23.0 1.0
CD2 A:HIS188 3.2 21.9 1.0
CG A:ASP92 3.3 43.2 1.0
OD2 A:ASP92 3.7 50.4 1.0
N A:GLY93 3.9 29.0 1.0
OE1 A:GLU126 4.0 36.5 1.0
ND1 A:HIS81 4.1 30.7 1.0
ND1 A:HIS188 4.2 23.2 1.0
CG A:HIS81 4.2 28.2 1.0
CA A:GLY93 4.2 25.5 1.0
O A:HOH809 4.2 33.6 1.0
ND1 A:HIS359 4.2 28.5 1.0
CD A:GLU126 4.3 36.3 1.0
CG A:HIS188 4.3 20.6 1.0
C A:ASP92 4.4 35.2 1.0
OE2 A:GLU127 4.4 45.7 1.0
OE2 A:GLU126 4.4 36.0 1.0
O A:HOH664 4.4 55.7 1.0
O A:HOH631 4.5 24.8 1.0
CB A:ASP92 4.6 35.1 1.0
CE1 A:HIS359 4.6 30.5 1.0
O A:HOH1017 4.7 42.6 1.0
CA A:ASP92 4.8 32.7 1.0
OG A:SER80 4.9 20.3 1.0
O A:ASP92 4.9 34.1 1.0

Reference:

J.Abendroth, D.G.Conrady, D.D.Lorimer, T.E.Edwards. Crystal Structure of An Amidase (Hydantoinase/Carbamoylase Family) From Burkholderia Phymatum To Be Published.
Page generated: Thu Aug 21 12:53:27 2025

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