Atomistry » Zinc » PDB 6bh7-6bsm » 6bj2
Atomistry »
  Zinc »
    PDB 6bh7-6bsm »
      6bj2 »

Zinc in PDB 6bj2: TCR589 in Complex with Hiv(POL448-456)/Hla-B35

Protein crystallography data

The structure of TCR589 in Complex with Hiv(POL448-456)/Hla-B35, PDB code: 6bj2 was solved by K.M.Jude, L.V.Sibener, K.C.Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.76 / 3.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 156.480, 59.280, 123.570, 90.00, 110.77, 90.00
R / Rfree (%) 24.5 / 27.6

Zinc Binding Sites:

The binding sites of Zinc atom in the TCR589 in Complex with Hiv(POL448-456)/Hla-B35 (pdb code 6bj2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the TCR589 in Complex with Hiv(POL448-456)/Hla-B35, PDB code: 6bj2:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 6bj2

Go back to Zinc Binding Sites List in 6bj2
Zinc binding site 1 out of 3 in the TCR589 in Complex with Hiv(POL448-456)/Hla-B35


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of TCR589 in Complex with Hiv(POL448-456)/Hla-B35 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn303

b:0.9
occ:1.00
OD1 D:ASP120 2.0 0.0 1.0
OD2 D:ASP120 2.0 0.8 1.0
NE2 E:HIS135 2.0 0.4 1.0
CG D:ASP120 2.2 0.0 1.0
CE1 E:HIS135 2.7 0.9 1.0
CD2 E:HIS135 3.1 0.6 1.0
CB D:ASP120 3.7 0.9 1.0
ND1 E:HIS135 3.8 0.8 1.0
CG E:HIS135 4.0 0.2 1.0
CA D:ASP120 4.6 0.2 1.0
O D:ASP120 4.8 0.1 1.0
C D:ASP120 4.9 0.8 1.0

Zinc binding site 2 out of 3 in 6bj2

Go back to Zinc Binding Sites List in 6bj2
Zinc binding site 2 out of 3 in the TCR589 in Complex with Hiv(POL448-456)/Hla-B35


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of TCR589 in Complex with Hiv(POL448-456)/Hla-B35 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn302

b:0.6
occ:1.00
OE2 E:GLU154 2.0 0.6 1.0
NE2 E:HIS152 2.0 0.2 1.0
NE2 E:HIS10 2.1 91.0 1.0
CE1 E:HIS152 2.5 0.1 1.0
CE1 E:HIS10 2.6 85.1 1.0
CD2 E:HIS152 3.0 0.2 1.0
CD E:GLU154 3.2 0.7 1.0
CD2 E:HIS10 3.3 79.0 1.0
ND1 E:HIS152 3.5 0.5 1.0
CG E:HIS152 3.7 0.8 1.0
CG E:GLU154 3.8 0.1 1.0
ND1 E:HIS10 3.8 80.4 1.0
CE2 E:TYR213 3.8 95.6 1.0
OE1 E:GLU154 4.2 0.1 1.0
CG E:HIS10 4.2 77.9 1.0
OH E:TYR213 4.2 80.1 1.0
CZ E:TYR213 4.3 82.2 1.0
CD2 E:TYR213 4.6 88.6 1.0

Zinc binding site 3 out of 3 in 6bj2

Go back to Zinc Binding Sites List in 6bj2
Zinc binding site 3 out of 3 in the TCR589 in Complex with Hiv(POL448-456)/Hla-B35


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of TCR589 in Complex with Hiv(POL448-456)/Hla-B35 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:0.4
occ:0.50
OE2 A:GLU58 2.0 0.4 1.0
O A:HOH401 2.2 0.1 1.0
CD A:GLU58 2.9 0.3 1.0
OE1 A:GLU58 3.2 0.1 1.0
CG A:GLU58 4.3 0.2 1.0

Reference:

L.V.Sibener, R.A.Fernandes, E.M.Kolawole, C.B.Carbone, F.Liu, D.Mcaffee, M.E.Birnbaum, X.Yang, L.F.Su, W.Yu, S.Dong, M.H.Gee, K.M.Jude, M.M.Davis, J.T.Groves, W.A.Goddard Iii, J.R.Heath, B.D.Evavold, R.D.Vale, K.C.Garcia. Isolation of A Structural Mechanism For Uncoupling T Cell Receptor Signaling From Peptide-Mhc Binding. Cell V. 174 672 2018.
ISSN: ISSN 1097-4172
PubMed: 30053426
DOI: 10.1016/J.CELL.2018.06.017
Page generated: Mon Oct 28 17:58:12 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy