Atomistry » Zinc » PDB 5znl-6a3z » 5zvx
Atomistry »
  Zinc »
    PDB 5znl-6a3z »
      5zvx »

Zinc in PDB 5zvx: Crystal Structure of K86A Mutant of Phosphomannose Isomerase From Salmonella Typhimurium

Enzymatic activity of Crystal Structure of K86A Mutant of Phosphomannose Isomerase From Salmonella Typhimurium

All present enzymatic activity of Crystal Structure of K86A Mutant of Phosphomannose Isomerase From Salmonella Typhimurium:
5.3.1.8;

Protein crystallography data

The structure of Crystal Structure of K86A Mutant of Phosphomannose Isomerase From Salmonella Typhimurium, PDB code: 5zvx was solved by M.Bangera, M.R.N.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.58 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.190, 91.730, 116.660, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of K86A Mutant of Phosphomannose Isomerase From Salmonella Typhimurium (pdb code 5zvx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of K86A Mutant of Phosphomannose Isomerase From Salmonella Typhimurium, PDB code: 5zvx:

Zinc binding site 1 out of 1 in 5zvx

Go back to Zinc Binding Sites List in 5zvx
Zinc binding site 1 out of 1 in the Crystal Structure of K86A Mutant of Phosphomannose Isomerase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of K86A Mutant of Phosphomannose Isomerase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:13.0
occ:0.70
 O A:HOH503 1.5 16.9 1.0
OE1 A:GLU134 2.0 15.8 1.0
NE2 A:HIS255 2.1 9.5 1.0
NE2 A:HIS99 2.2 13.0 1.0
CD A:GLU134 2.8 16.3 1.0
OE2 A:GLU134 3.0 15.2 1.0
CE1 A:HIS255 3.0 9.2 1.0
CD2 A:HIS99 3.0 12.8 1.0
CD2 A:HIS255 3.2 10.0 1.0
CE1 A:HIS99 3.3 13.6 1.0
O1 A:EDO407 3.5 27.6 1.0
O A:HOH714 3.9 43.3 1.0
OE1 A:GLN97 3.9 17.0 1.0
OH A:TYR257 3.9 14.5 1.0
C1 A:EDO407 3.9 23.4 1.0
CG A:GLU134 4.1 12.9 1.0
ND1 A:HIS255 4.2 10.1 1.0
CG A:HIS99 4.2 11.7 1.0
O A:HOH572 4.3 43.3 1.0
CG A:HIS255 4.3 8.7 1.0
ND1 A:HIS99 4.3 14.3 1.0
CB A:GLN97 4.5 11.2 1.0
CZ A:TYR257 4.5 13.2 1.0
OE1 A:GLU264 4.7 13.1 0.5
CD A:GLN97 4.8 14.4 1.0
CB A:GLU134 4.8 10.7 1.0
CE2 A:TYR257 4.9 12.6 1.0
CB A:LEU249 4.9 9.3 1.0
CG A:LEU249 4.9 9.4 1.0

Reference:

M.Bangera, G.Gowda K, S.R.Sagurthi, M.R.N.Murthy. Structural and Functional Insights Into Phosphomannose Isomerase: the Role of Zinc and Catalytic Residues. Acta Crystallogr D Struct V. 75 475 2019BIOL.
ISSN: ISSN 2059-7983
PubMed: 31063150
DOI: 10.1107/S2059798319004169
Page generated: Mon Oct 28 17:11:24 2024

Last articles

Mg in 5D9B
Mg in 5D8N
Mg in 5D92
Mg in 5D91
Mg in 5D8G
Mg in 5D7R
Mg in 5D87
Mg in 5D5L
Mg in 5D86
Mg in 5D7D
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy