Zinc in PDB 5zjc: Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41

All present enzymatic activity of Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41:
3.5.2.6;

The structure of Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41, PDB code: 5zjc was solved by H.Zhang, Q.Hao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.67 / 0.96
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.610, 59.980, 42.067, 90.00, 97.88, 90.00
R / Rfree (%)	12.8 / 14.6

The binding sites of Zinc atom in the Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41 (pdb code 5zjc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41, PDB code: 5zjc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:18.9 occ:1.00 ND1 A:HIS122 2.0 19.5 1.0 NE2 A:HIS189 2.1 19.6 1.0 NE2 A:HIS120 2.1 18.3 1.0 S1 A:9EX305 2.3 19.3 1.0 CE1 A:HIS122 3.0 20.4 1.0 CE1 A:HIS189 3.0 19.7 1.0 CE1 A:HIS120 3.0 18.9 1.0 CD2 A:HIS120 3.1 18.2 1.0 CG A:HIS122 3.1 19.1 1.0 CD2 A:HIS189 3.1 19.4 1.0 C1 A:9EX305 3.3 21.0 1.0 CB A:HIS122 3.4 18.2 1.0 ZN A:ZN302 3.7 18.9 1.0 SG A:CYS208 4.0 18.6 1.0 NE2 A:HIS122 4.1 20.7 1.0 OD1 A:ASP124 4.1 18.4 1.0 ND1 A:HIS120 4.1 19.1 1.0 ND1 A:HIS189 4.1 20.3 1.0 CB A:CYS208 4.2 19.2 1.0 CD2 A:HIS122 4.2 20.2 1.0 CG A:HIS120 4.2 18.2 1.0 CG A:HIS189 4.2 19.6 1.0 CG2 A:THR190 4.5 20.4 1.0 C2 A:9EX305 4.6 23.6 1.0 OD2 A:ASP124 4.8 18.7 1.0 CA A:HIS122 4.9 17.7 1.0 CG A:ASP124 4.9 17.4 1.0 O A:HOH504 5.0 22.1 0.8

Zinc binding site 2 out of 2 in the Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Ndm-1 in Complex with D-Captopril Derivative CY41 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:18.9 occ:1.00 OD2 A:ASP124 1.9 18.7 1.0 NE2 A:HIS250 2.0 18.7 1.0 S1 A:9EX305 2.3 19.3 1.0 SG A:CYS208 2.3 18.6 1.0 CG A:ASP124 2.9 17.4 1.0 CE1 A:HIS250 3.0 19.0 1.0 CD2 A:HIS250 3.1 19.2 1.0 OD1 A:ASP124 3.3 18.4 1.0 C1 A:9EX305 3.3 21.0 1.0 CB A:CYS208 3.5 19.2 1.0 C4 A:9EX305 3.6 23.9 1.0 ZN A:ZN301 3.7 18.9 1.0 C2 A:9EX305 4.0 23.6 1.0 ND1 A:HIS250 4.1 19.5 1.0 CG A:HIS250 4.2 18.8 1.0 CB A:ASP124 4.2 17.1 1.0 CB A:SER249 4.3 18.9 1.0 CE1 A:HIS120 4.5 18.9 1.0 NE2 A:HIS120 4.5 18.3 1.0 NE2 A:HIS189 4.5 19.6 1.0 OG A:SER249 4.6 19.0 1.0 CA A:CYS208 4.7 19.2 1.0 CE1 A:HIS189 4.7 19.7 1.0 CE A:LYS125 4.8 18.6 1.0 CD A:LYS125 5.0 19.0 1.0

H.Zhang, Q.Hao. Crystal Structure of Ndm-1 To Be Published.