Zinc in PDB 5y05: Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis

The structure of Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis, PDB code: 5y05 was solved by A.Kumar, S.Karthikeyan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.57 / 2.80
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	77.137, 77.137, 85.791, 90.00, 90.00, 120.00
R / Rfree (%)	25.8 / 31.2

The binding sites of Zinc atom in the Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis (pdb code 5y05). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis, PDB code: 5y05:

Zinc binding site 1 out of 1 in the Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:0.1 occ:1.00 SG A:CYS204 2.3 98.3 1.0 SG A:CYS230 2.3 0.4 1.0 SG A:CYS207 2.4 0.4 1.0 SG A:CYS233 2.4 97.9 1.0 CB A:CYS230 2.7 97.7 1.0 CB A:CYS204 3.2 95.2 1.0 CB A:CYS233 3.6 0.1 1.0 CB A:CYS207 3.7 0.4 1.0 N A:CYS207 3.8 85.9 1.0 N A:CYS233 4.2 0.2 1.0 CA A:CYS230 4.2 98.3 1.0 CB A:ALA206 4.3 92.2 1.0 CA A:CYS207 4.3 98.3 1.0 CA A:CYS233 4.4 0.6 1.0 CG1 A:ILE209 4.5 0.7 1.0 CA A:CYS204 4.6 86.5 1.0 CB A:ALA235 4.8 85.7 1.0 N A:GLY234 4.8 0.6 1.0 C A:ALA206 4.8 94.9 1.0 N A:ALA206 4.8 93.8 1.0 C A:CYS230 4.8 0.3 1.0 N A:ALA235 4.9 92.0 1.0 CA A:ALA206 4.9 90.3 1.0 CD1 A:ILE209 4.9 0.5 1.0 N A:CYS230 5.0 96.2 1.0

A.Kumar, S.Karthikeyan. Crystal Structure of the MSMEG_4306 Gene Product From Mycobacterium Smegmatis Acta Crystallogr F Struct V. 74 166 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 29497021
DOI: 10.1107/S2053230X18002236