Atomistry » Zinc » PDB 5wgw-5wpn » 5wlk
Atomistry »
  Zinc »
    PDB 5wgw-5wpn »
      5wlk »

Zinc in PDB 5wlk: De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2

Protein crystallography data

The structure of De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2, PDB code: 5wlk was solved by S.-Q.Zhang, L.Liu, W.F.Degrado, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.14 / 1.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 80.995, 80.995, 65.308, 90.00, 90.00, 120.00
R / Rfree (%) 16.8 / 17.8

Zinc Binding Sites:

The binding sites of Zinc atom in the De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2 (pdb code 5wlk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2, PDB code: 5wlk:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5wlk

Go back to Zinc Binding Sites List in 5wlk
Zinc binding site 1 out of 2 in the De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:17.5
occ:0.42
OE2 A:GLU12 2.1 19.4 1.0
OE2 B:GLU12 2.1 19.6 1.0
OE1 B:GLU12 2.7 20.5 1.0
OE1 A:GLU12 2.7 20.8 1.0
CD B:GLU12 2.7 18.6 1.0
CD A:GLU12 2.7 18.3 1.0
ND1 B:HIS15 4.0 17.3 1.0
ND1 A:HIS15 4.0 16.2 1.0
CG B:GLU12 4.2 17.6 1.0
CG A:GLU12 4.2 17.1 1.0
CE1 B:HIS15 4.4 19.1 1.0
CE1 A:HIS15 4.5 18.4 1.0

Zinc binding site 2 out of 2 in 5wlk

Go back to Zinc Binding Sites List in 5wlk
Zinc binding site 2 out of 2 in the De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn101

b:31.1
occ:0.42
OE2 D:GLU12 2.1 29.4 0.8
OE2 C:GLU12 2.1 29.1 0.8
CD D:GLU12 2.8 29.3 0.8
CD C:GLU12 2.8 28.8 0.8
OE1 D:GLU12 2.8 31.2 0.8
OE1 C:GLU12 2.8 29.9 0.8
ND1 D:HIS15 4.0 28.1 1.0
ND1 C:HIS15 4.0 28.3 1.0
CG D:GLU12 4.3 28.1 1.0
CG C:GLU12 4.3 28.5 1.0
CE1 D:HIS15 4.4 30.6 1.0
CE1 C:HIS15 4.4 30.4 1.0

Reference:

S.Q.Zhang, M.Chino, L.Liu, Y.Tang, X.Hu, W.F.Degrado, A.Lombardi. De Novo Design of Tetranuclear Transition Metal Clusters Stabilized By Hydrogen-Bonded Networks in Helical Bundles. J. Am. Chem. Soc. V. 140 1294 2018.
ISSN: ESSN 1520-5126
PubMed: 29249157
DOI: 10.1021/JACS.7B08261
Page generated: Mon Oct 28 14:21:00 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy