Atomistry » Zinc » PDB 5vur-5w0n » 5vwm
Atomistry »
  Zinc »
    PDB 5vur-5w0n »
      5vwm »

Zinc in PDB 5vwm: Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor

Enzymatic activity of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor

All present enzymatic activity of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor:
3.5.1.108;

Protein crystallography data

The structure of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor, PDB code: 5vwm was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.30 / 1.80
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.850, 47.590, 48.410, 111.30, 109.00, 98.39
R / Rfree (%) 13.8 / 17.9

Other elements in 5vwm:

The structure of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor (pdb code 5vwm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor, PDB code: 5vwm:

Zinc binding site 1 out of 1 in 5vwm

Go back to Zinc Binding Sites List in 5vwm
Zinc binding site 1 out of 1 in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:7.0
occ:1.00
 NE2 A:HIS78 2.0 8.8 1.0
OD1 A:ASP241 2.0 6.0 1.0
O22 A:C90401 2.1 10.1 1.0
NE2 A:HIS237 2.1 4.5 1.0
O24 A:C90401 2.1 12.2 1.0
CG A:ASP241 2.7 3.5 1.0
OD2 A:ASP241 2.8 7.9 1.0
C22 A:C90401 2.8 11.7 1.0
N23 A:C90401 2.9 16.1 1.0
CE1 A:HIS78 2.9 11.9 1.0
CD2 A:HIS78 3.0 7.9 1.0
CE1 A:HIS237 3.0 4.2 1.0
CD2 A:HIS237 3.1 3.1 1.0
OG1 A:THR190 4.0 6.4 1.0
ND1 A:HIS78 4.1 13.7 1.0
CG A:HIS78 4.1 9.3 1.0
ND1 A:HIS237 4.1 4.1 1.0
CB A:ASP241 4.2 3.3 1.0
CG A:HIS237 4.2 3.4 1.0
C18 A:C90401 4.3 11.0 1.0
CG A:GLU77 4.3 7.0 1.0
CB A:THR190 4.3 4.7 1.0
OE2 A:GLU77 4.4 11.3 1.0
C21 A:C90401 4.7 14.1 1.0
O20 A:C90401 4.7 16.9 1.0
C19 A:C90401 4.8 14.2 1.0
CA A:ASP241 4.8 4.6 1.0
O A:HIS237 4.9 4.7 1.0
CD A:GLU77 4.9 12.0 1.0
CA A:THR190 4.9 5.9 1.0
CE1 A:HIS264 4.9 7.8 1.0
N17 A:C90401 4.9 16.0 1.0

Reference:

S.L.Delker, S.J.Mayclin, J.N.Phan, J.Abendroth, D.Lorimer, T.E.Edwards. Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir-090 Inhibitor To Be Published.
Page generated: Mon Oct 28 13:31:54 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy