Zinc in PDB 5uw2: Structure of E. Coli Mce Protein Mlad, Periplasmic Domain

The structure of Structure of E. Coli Mce Protein Mlad, Periplasmic Domain, PDB code: 5uw2 was solved by G.Bhabha, D.C.Ekiert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.60 / 2.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	122.360, 63.820, 91.150, 90.00, 130.01, 90.00
R / Rfree (%)	23.9 / 26.5

The binding sites of Zinc atom in the Structure of E. Coli Mce Protein Mlad, Periplasmic Domain (pdb code 5uw2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Structure of E. Coli Mce Protein Mlad, Periplasmic Domain, PDB code: 5uw2:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Structure of E. Coli Mce Protein Mlad, Periplasmic Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of E. Coli Mce Protein Mlad, Periplasmic Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.7 occ:1.00 OG1 A:THR41 2.4 0.1 1.0 OD1 A:ASP130 2.5 0.6 1.0 OD2 A:ASP130 2.8 0.9 1.0 CG A:ASP130 3.0 0.8 1.0 CB A:THR41 3.3 0.3 1.0 N A:THR41 3.8 0.1 1.0 CA A:THR41 4.2 0.7 1.0 OE2 A:GLU85 4.2 0.7 1.0 CG2 A:THR41 4.5 0.6 1.0 CB A:ASP130 4.5 0.0 1.0 OE1 A:GLU85 4.7 0.1 1.0 C A:TYR40 4.8 0.0 1.0 CA A:TYR40 4.9 0.1 1.0 CD A:GLU85 4.9 0.1 1.0

Zinc binding site 2 out of 6 in the Structure of E. Coli Mce Protein Mlad, Periplasmic Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of E. Coli Mce Protein Mlad, Periplasmic Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.2 occ:1.00 NE2 A:HIS92 2.0 0.6 1.0 CE1 A:HIS92 2.3 0.8 1.0 CD2 A:HIS92 3.3 0.8 1.0 ND1 A:HIS92 3.5 0.6 1.0 CG A:HIS92 4.0 0.1 1.0

Zinc binding site 3 out of 6 in the Structure of E. Coli Mce Protein Mlad, Periplasmic Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of E. Coli Mce Protein Mlad, Periplasmic Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:0.6 occ:1.00 NE2 B:HIS92 2.2 0.7 1.0 OE1 B:GLU119 2.4 0.4 1.0 CE1 B:HIS92 2.6 0.2 1.0 CD B:GLU119 3.1 0.9 1.0 OE2 B:GLU119 3.3 0.4 1.0 CD2 B:HIS92 3.4 0.2 1.0 ND1 B:HIS92 3.8 0.8 1.0 CG B:HIS92 4.2 0.6 1.0 CD1 B:ILE127 4.3 0.6 1.0 CG B:GLU119 4.5 0.8 1.0 CB B:GLU119 4.9 0.6 1.0

Zinc binding site 4 out of 6 in the Structure of E. Coli Mce Protein Mlad, Periplasmic Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of E. Coli Mce Protein Mlad, Periplasmic Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:0.4 occ:1.00 OG1 B:THR41 2.2 0.7 1.0 OD2 B:ASP130 2.9 0.4 1.0 OD1 B:ASP130 2.9 0.3 1.0 CG B:ASP130 3.3 0.3 1.0 CB B:THR41 3.4 0.5 1.0 N B:THR41 3.7 0.0 1.0 OE2 B:GLU85 3.9 0.6 1.0 CA B:THR41 4.1 0.1 1.0 OE1 B:GLU85 4.3 0.2 1.0 CG2 B:THR41 4.5 1.0 1.0 CD B:GLU85 4.5 0.9 1.0 C B:TYR40 4.6 0.6 1.0 CA B:TYR40 4.7 1.0 1.0 CB B:ASP130 4.7 0.8 1.0 O B:THR39 4.8 0.2 1.0

Zinc binding site 5 out of 6 in the Structure of E. Coli Mce Protein Mlad, Periplasmic Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of E. Coli Mce Protein Mlad, Periplasmic Domain within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:0.4 occ:1.00 OG1 C:THR41 2.3 0.9 1.0 OD1 C:ASP130 2.9 0.4 1.0 OD2 C:ASP130 3.0 0.2 1.0 CG C:ASP130 3.4 0.6 1.0 CB C:THR41 3.4 0.5 1.0 N C:THR41 3.6 0.2 1.0 OE2 C:GLU85 3.8 0.4 1.0 CA C:THR41 4.1 0.4 1.0 OE1 C:GLU85 4.1 0.5 1.0 CD C:GLU85 4.4 0.7 1.0 C C:TYR40 4.4 0.4 1.0 CA C:TYR40 4.5 0.1 1.0 CG2 C:THR41 4.6 0.4 1.0 O C:THR39 4.7 0.6 1.0 CB C:ASP130 4.8 0.6 1.0

Zinc binding site 6 out of 6 in the Structure of E. Coli Mce Protein Mlad, Periplasmic Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of E. Coli Mce Protein Mlad, Periplasmic Domain within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn202 b:0.2 occ:1.00 OE1 C:GLU119 2.2 0.8 1.0 NE2 C:HIS92 2.3 0.4 1.0 CE1 C:HIS92 2.4 0.8 1.0 CD C:GLU119 3.2 1.0 1.0 CD2 C:HIS92 3.7 0.1 1.0 ND1 C:HIS92 3.7 0.4 1.0 OE2 C:GLU119 3.8 0.9 1.0 CG C:GLU119 4.3 0.5 1.0 CG C:HIS92 4.3 0.1 1.0 CD1 C:ILE127 4.6 0.6 1.0

D.C.Ekiert, G.Bhabha, G.L.Isom, G.Greenan, S.Ovchinnikov, I.R.Henderson, J.S.Cox, R.D.Vale. Architectures of Lipid Transport Systems For the Bacterial Outer Membrane. Cell V. 169 273 2017.
ISSN: ISSN 1097-4172
PubMed: 28388411
DOI: 10.1016/J.CELL.2017.03.019