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Zinc in PDB 5lrn: Structure of Mono-Zinc Mcr-1 in P21 Space Group

Protein crystallography data

The structure of Structure of Mono-Zinc Mcr-1 in P21 Space Group, PDB code: 5lrn was solved by P.Hinchliffe, N.G.Paterson, J.Spencer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.56 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.200, 82.330, 81.740, 90.00, 104.42, 90.00
R / Rfree (%) 16.5 / 18.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Mono-Zinc Mcr-1 in P21 Space Group (pdb code 5lrn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Mono-Zinc Mcr-1 in P21 Space Group, PDB code: 5lrn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5lrn

Go back to Zinc Binding Sites List in 5lrn
Zinc binding site 1 out of 2 in the Structure of Mono-Zinc Mcr-1 in P21 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Mono-Zinc Mcr-1 in P21 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:12.8
occ:1.00
OE2 A:GLU246 1.9 13.9 1.0
OD1 A:ASP465 2.0 14.6 1.0
NE2 A:HIS466 2.1 12.6 1.0
O2P A:TPO285 2.1 17.4 1.0
OG1 A:TPO285 2.4 13.9 1.0
CD A:GLU246 2.5 13.8 1.0
OE1 A:GLU246 2.6 16.9 1.0
P A:TPO285 2.9 16.9 1.0
CG A:ASP465 2.9 10.1 1.0
CE1 A:HIS466 2.9 16.0 1.0
CD2 A:HIS466 3.0 10.9 1.0
OD2 A:ASP465 3.1 9.5 1.0
CB A:TPO285 3.6 12.1 1.0
N A:TPO285 3.8 10.8 1.0
O3P A:TPO285 3.9 19.9 1.0
CA A:TPO285 4.0 9.3 1.0
OG1 A:THR247 4.0 13.6 1.0
ND1 A:HIS466 4.0 12.7 1.0
O1P A:TPO285 4.0 18.9 1.0
CG A:GLU246 4.0 13.2 1.0
CG A:HIS466 4.1 11.8 1.0
O A:HOH877 4.1 13.5 1.0
CG2 A:TPO285 4.2 12.7 1.0
NE2 A:HIS478 4.2 19.7 1.0
CB A:ASP465 4.3 11.7 1.0
C A:SER284 4.5 10.4 1.0
N A:THR247 4.5 11.5 1.0
CE1 A:HIS478 4.7 25.5 1.0
CA A:GLU246 4.7 11.1 1.0
CD2 A:HIS395 4.8 29.9 1.0
CB A:GLU246 4.8 12.0 1.0
CD2 A:HIS478 4.9 19.4 1.0
NE2 A:HIS395 4.9 34.7 1.0
CA A:SER284 5.0 11.5 1.0

Zinc binding site 2 out of 2 in 5lrn

Go back to Zinc Binding Sites List in 5lrn
Zinc binding site 2 out of 2 in the Structure of Mono-Zinc Mcr-1 in P21 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Mono-Zinc Mcr-1 in P21 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:15.9
occ:1.00
OE2 B:GLU246 2.0 14.3 1.0
OD1 B:ASP465 2.0 15.2 1.0
NE2 B:HIS466 2.1 19.5 1.0
O2P B:TPO285 2.2 21.3 1.0
OG1 B:TPO285 2.4 20.6 1.0
CD B:GLU246 2.6 11.7 1.0
OE1 B:GLU246 2.6 13.5 1.0
CG B:ASP465 2.9 16.2 1.0
P B:TPO285 2.9 21.9 1.0
CD2 B:HIS466 3.0 13.2 1.0
CE1 B:HIS466 3.0 14.4 1.0
OD2 B:ASP465 3.1 14.2 1.0
CB B:TPO285 3.6 21.6 1.0
O1P B:TPO285 3.8 23.8 1.0
N B:TPO285 3.9 16.7 1.0
CA B:TPO285 4.0 14.7 1.0
OG1 B:THR247 4.0 18.7 1.0
O3P B:TPO285 4.0 27.3 1.0
ND1 B:HIS466 4.0 15.1 1.0
CG B:HIS466 4.0 13.5 1.0
CG B:GLU246 4.1 11.5 1.0
O B:HOH774 4.1 13.1 1.0
CG2 B:TPO285 4.2 19.7 1.0
NE2 B:HIS478 4.2 35.9 1.0
CB B:ASP465 4.3 11.3 1.0
N B:THR247 4.5 11.1 1.0
C B:SER284 4.6 21.3 1.0
CE1 B:HIS478 4.7 25.6 1.0
CD2 B:HIS395 4.7 27.4 1.0
CA B:GLU246 4.7 13.3 1.0
CB B:GLU246 4.8 14.4 1.0
CD2 B:HIS478 4.8 27.2 1.0
NE2 B:HIS395 4.9 28.5 1.0

Reference:

P.Hinchliffe, Q.E.Yang, E.Portal, T.Young, H.Li, C.L.Tooke, M.J.Carvalho, N.G.Paterson, J.Brem, P.R.Niumsup, U.Tansawai, L.Lei, M.Li, Z.Shen, Y.Wang, C.J.Schofield, A.J.Mulholland, J.Shen, N.Fey, T.R.Walsh, J.Spencer. Insights Into the Mechanistic Basis of Plasmid-Mediated Colistin Resistance From Crystal Structures of the Catalytic Domain of Mcr-1. Sci Rep V. 7 39392 2017.
ISSN: ESSN 2045-2322
PubMed: 28059088
DOI: 10.1038/SREP39392
Page generated: Sun Oct 27 21:16:26 2024

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